View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5779_low_4 (Length: 258)
Name: NF5779_low_4
Description: NF5779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5779_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3855217 - 3854998
Alignment:
| Q |
1 |
cccttccccaatttgctcaaatcccacatttctgactcttcttctatttcttannnnnnncccttgaaattgttttacaatgtggagtttctacgcgcac |
100 |
Q |
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| T |
3855217 |
cccttccccaatttgctcaaatcccacatttctgactcttcttctatttcttatttttttcccttgaaattgttttacaatgtggagtttctacgcgcac |
3855118 |
T |
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| Q |
101 |
aagtagcggtacaaacacccttgaaattgtttaactatgtcacgccagtacagacaactcagtttttcaatttaactcgtgtggagcttagctttgagaa |
200 |
Q |
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|||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
3855117 |
aagtagcggtacgaaaacccttgaaattgtttaactatgtcgcgccagtacagacaactcagtttttcaatttaactcatgtggagcttagctttgag-a |
3855019 |
T |
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| Q |
201 |
aagaggatgaggaatattatt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
3855018 |
aagaggatgaggaatattatt |
3854998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4141406 - 4141642
Alignment:
| Q |
1 |
cccttccccaatttgctcaaatcccacatttctgactcttcttctatttcttannnnnnncccttgaaattgttttacaatgtggagtttctacgcgcac |
100 |
Q |
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||||||||||| ||||||||| |||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
4141406 |
cccttccccaaattgctcaaagcccacatttccgactcttcttctatttcgtcttttttgcccttgaaattgttttacaatgtggagtttctacgcgcac |
4141505 |
T |
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| Q |
101 |
aagtagcggtacaaacacccttgaaattgtttaactatgtcacgccagtacagaca------------------actcagtttttcaatttaactcgtgt |
182 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||| | |||||||| ||| |||||||||||||||||||||| | | |
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| T |
4141506 |
aagtcgcggtacaaacacccttgaaattgtttgactatgtcgcaccagtacaaacatctgaacaacaagacactactcagtttttcaatttaactcatat |
4141605 |
T |
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| Q |
183 |
ggagcttagctttgagaaaagaggatgaggaatattat |
220 |
Q |
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| T |
4141606 |
ggagcttagctttgag-aaggaggatgaggaatattat |
4141642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 41541948 - 41541991
Alignment:
| Q |
1 |
cccttccccaatttgctcaaatcccacatttctgactcttcttc |
44 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41541948 |
cccttccccaatttgctcaaagcccacatttctgactcttcttc |
41541991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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