View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5779_low_5 (Length: 248)
Name: NF5779_low_5
Description: NF5779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5779_low_5 |
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| [»] chr6 (5 HSPs) |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 16579276 - 16579512
Alignment:
| Q |
13 |
atgatgccgaaattgaagaataataataagcagtacgaggacttgatcaacaagtgcagggatcctgagagttacggcgagaactctaacaaagaatatg |
112 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |
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| T |
16579276 |
atgattccgaaattgaagaataataataagcagtatgaggacttgatcaacaagtgcagggatcctgagagttacggcgaggactctgacgaagaatatg |
16579375 |
T |
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| Q |
113 |
acagcattgatgatattatcgatgctgatccatcaatcacatgggaaactg-ttaaaaagaagttcaaatggcttgtggaagttaggggaaggaagaaaa |
211 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||||| || |||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16579376 |
acagcattgatgatattatcgatgctcatccatcgatcacatgggaaattgtttaacaagaagttcaaatggcttgtggcagttaggggaaggaagaaaa |
16579475 |
T |
|
| Q |
212 |
ctggaaggtttgaacaagttgatcacatcttacctac |
248 |
Q |
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||| ||||||||||||||||||||||||||||||||| |
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| T |
16579476 |
ctgaaaggtttgaacaagttgatcacatcttacctac |
16579512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 16616104 - 16615868
Alignment:
| Q |
13 |
atgatgccgaaattgaagaataataataagcagtacgaggacttgatcaacaagtgcagggatcctgagagttacggcgagaactctaacaaagaatatg |
112 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |
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| T |
16616104 |
atgattccgaaattgaagaataataataagcagtatgaggacttgatcaacaagtgcagggatcctgagagttacggcgaggactctgacgaagaatatg |
16616005 |
T |
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| Q |
113 |
acagcattgatgatattatcgatgctgatccatcaatcacatgggaaactg-ttaaaaagaagttcaaatggcttgtggaagttaggggaaggaagaaaa |
211 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||||| || |||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16616004 |
acagcattgatgatattatcgatgctcatccatcgatcacatgggaaattgtttaacaagaagttcaaatggcttgtggcagttaggggaaggaagaaaa |
16615905 |
T |
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| Q |
212 |
ctggaaggtttgaacaagttgatcacatcttacctac |
248 |
Q |
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||| ||||||||||||||||||||||||||||||||| |
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| T |
16615904 |
ctgaaaggtttgaacaagttgatcacatcttacctac |
16615868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 75 - 248
Target Start/End: Original strand, 16872657 - 16872831
Alignment:
| Q |
75 |
tcctgagagttacggcgagaactctaacaaagaatatgacagcattgatgatattatcgatgctgatccatcaatcacatgggaaactg-ttaaaaagaa |
173 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || |||| ||||| |
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| T |
16872657 |
tcctgggagttacggcgaggactctaacaaagaatatgacagcattgaagatattatcgatgctgatccatcgatcacatgggaaattgtttaacaagaa |
16872756 |
T |
|
| Q |
174 |
gttcaaatggcttgtggaagttaggggaaggaagaaaactggaaggtttgaacaagttgatcacatcttacctac |
248 |
Q |
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| T |
16872757 |
gttcaaatggcttgtggcagttaggggaaggaagaaaattgaaaggtttgaacaagttgatcacatcttacctac |
16872831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 16570696 - 16570902
Alignment:
| Q |
13 |
atgatgccgaaattgaagaataataataagcagtacgaggacttgatcaacaagtgcagggatcctgagagttacggcgagaactctaacaaagaatatg |
112 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||| ||||| ||||||||||| |
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| T |
16570696 |
atgatgcccaaattgaagaataataataagcagtatgaggacttgattaacaaga--------------agttacggcgaggactctgacaaagaatatt |
16570781 |
T |
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| Q |
113 |
acagcattgatgatattatcgatgctgatccatcaatcacatgggaaactgttaaaaagaagttcaaatggcttgtggaagttaggggaaggaagaaaac |
212 |
Q |
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| ||| |||| | |||||||||||||||||||| ||||||||||| ||| |||| |||||||||||| ||||||| | |||| ||||||| ||||| |
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| T |
16570782 |
agagccatgataagattatcgatgctgatccatccatcacatgggacacttttaacaagaagttcaaagatcttgtggcggctaggagaaggaataaaac |
16570881 |
T |
|
| Q |
213 |
tggaaggtttgaacaagttga |
233 |
Q |
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||||||||||||||||||||| |
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| T |
16570882 |
tggaaggtttgaacaagttga |
16570902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 233
Target Start/End: Complemental strand, 17040549 - 17040334
Alignment:
| Q |
22 |
aaattgaagaataataataagcagtacgaggacttgatcaacaagtgcaggga---tcctgagagttacggcgagaactctaacaaagaatatgacagca |
118 |
Q |
| |
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||||||||||| ||||||| |||||| ||||| ||||| |||||||||||| | ||||||||||||||| | ||| | || |||||||||| ||| |
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| T |
17040549 |
aaattgaagaagaataatatgcagtatgaggatttgattaacaagtgcaggcagaatcctgagagttacggtagggactttgacgaagaatatgagagct |
17040450 |
T |
|
| Q |
119 |
tt-gatgatattatcgatgctgatccatcaatcacatgggaaactgttaaaaagaagttcaaatggcttgtggaagttaggggaaggaagaaaactggaa |
217 |
Q |
| |
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| ||| ||||||||||||||||| || ||||||||| | |||||||| |||||||||||| |||||||| | |||||||||||||||| |||||| |
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| T |
17040449 |
tacgattcgattatcgatgctgatccgtcgatcacatggcacactgttaacaagaagttcaaacagcttgtggcggctaggggaaggaagaaatctggaa |
17040350 |
T |
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| Q |
218 |
ggtttgaacaagttga |
233 |
Q |
| |
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|| |||| |||||||| |
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| T |
17040349 |
ggcttgagcaagttga |
17040334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 32790754 - 32790969
Alignment:
| Q |
21 |
gaaattgaagaataataataagcagtacgaggacttgatcaacaagtgcaggga---tcctgagagttacggcgagaactctaacaaagaatatgacagc |
117 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| ||||| | |||||||||||| ||||||||||||||| ||| ||||| || |||||||||| ||| |
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| T |
32790754 |
gaaattgaagaagaataataagcagtatgagggtttgattaccaagtgcagggaaaatcctgagagttacggtgagcactctgacgaagaatatgagagc |
32790853 |
T |
|
| Q |
118 |
attgatgatattatcgatgctgatccatcaatcacatgggaaactgttaaaaagaagttcaaatggcttgtggaagttaggggaaggaagaaaactggaa |
217 |
Q |
| |
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||| |||||||| |||||||||||||| ||||||||||| ||||| || |||||||||||| |||||||| || |||||||||||| |||||||||| |
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| T |
32790854 |
catgacgatattattgatgctgatccatcgatcacatgggatactgtgaacaagaagttcaaagagcttgtggcagctaggggaaggaataaaactggaa |
32790953 |
T |
|
| Q |
218 |
ggtttgaacaagttga |
233 |
Q |
| |
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|||||||||||||||| |
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| T |
32790954 |
ggtttgaacaagttga |
32790969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 236749 - 236664
Alignment:
| Q |
148 |
atcacatgggaaactgttaaaaagaagttcaaatggcttgtggaagttaggggaaggaagaaaactggaaggtttgaacaagttga |
233 |
Q |
| |
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||||||||||| |||||||| |||||||||||| | || |||||| ||||| |||||| |||||||||||||||||| ||||| |
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| T |
236749 |
atcacatgggacactgttaacaagaagttcaaagagattctggaagccaggggcaggaagggaactggaaggtttgaacaggttga |
236664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 48301175 - 48301090
Alignment:
| Q |
148 |
atcacatgggaaactgttaaaaagaagttcaaatggcttgtggaagttaggggaaggaagaaaactggaaggtttgaacaagttga |
233 |
Q |
| |
|
||||||||||| |||||||| || ||||||||| | || |||||| ||||| |||||| |||||||||||||||||| ||||| |
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| T |
48301175 |
atcacatgggatactgttaacaacaagttcaaagagattctggaagccaggggcaggaagggaactggaaggtttgaacaggttga |
48301090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 7389056 - 7389141
Alignment:
| Q |
148 |
atcacatgggaaactgttaaaaagaagttcaaatggcttgtggaagttaggggaaggaagaaaactggaaggtttgaacaagttga |
233 |
Q |
| |
|
||||||||||| || ||||| |||||||||||| | || |||||| ||||| |||||| |||||||||||||||||| ||||| |
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| T |
7389056 |
atcacatgggacacggttaacaagaagttcaaagagattctggaagccaggggcaggaagggaactggaaggtttgaacaggttga |
7389141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 12772 - 12738
Alignment:
| Q |
13 |
atgatgccgaaattgaagaataataataagcagta |
47 |
Q |
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||||||| ||||||||||||||||||||||||||| |
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| T |
12772 |
atgatgcagaaattgaagaataataataagcagta |
12738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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