View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5779_low_6 (Length: 238)

Name: NF5779_low_6
Description: NF5779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5779_low_6
NF5779_low_6
[»] chr6 (6 HSPs)
chr6 (49-238)||(16579654-16579842)
chr6 (49-238)||(16615538-16615726)
chr6 (48-238)||(16872973-16873165)
chr6 (112-238)||(16571077-16571204)
chr6 (17-45)||(16579914-16579942)
chr6 (17-45)||(16615438-16615466)
[»] chr2 (2 HSPs)
chr2 (49-238)||(32791123-32791312)
chr2 (48-238)||(236323-236513)
[»] chr1 (1 HSPs)
chr1 (48-238)||(7389292-7389482)
[»] chr7 (1 HSPs)
chr7 (48-238)||(48300749-48300939)
[»] scaffold0256 (3 HSPs)
scaffold0256 (115-234)||(12505-12625)
scaffold0256 (176-237)||(14937-14998)
scaffold0256 (48-86)||(14842-14880)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 49 - 238
Target Start/End: Complemental strand, 16579842 - 16579654
Alignment:
Q  49 tgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaannnnnnnnaagatagtaactaagtttccccaaacacgaatcgatccgttatag 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        |||| || ||||||||||||||||||||||||| || ||||||||    
T  16579842 tgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaattttttt-aagaaagcaactaagtttccccaaacacgaatcaatacgttatag 16579744  T
Q  149 tcggccccttacttagtttcattctcatctggctcctctgaatcatcaacatttaagtttggatactgcacaagaatatcgagaatgacc 238  Q
    |||||||||| |||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16579743 tcggcccctttcttagtttcactctcatatggctcctctgaatcatcaacatttatgtttggatactgcacaagaatatcgagaatgacc 16579654  T

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Target: chr6; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 49 - 238
Target Start/End: Original strand, 16615538 - 16615726
Alignment:
Q  49 tgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaannnnnnnnaagatagtaactaagtttccccaaacacgaatcgatccgttatag 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        |||| || ||||||||||||||||||||||||| || ||||||||    
T  16615538 tgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaattttttt-aagaaagcaactaagtttccccaaacacgaatcaatacgttatag 16615636  T
Q  149 tcggccccttacttagtttcattctcatctggctcctctgaatcatcaacatttaagtttggatactgcacaagaatatcgagaatgacc 238  Q
    |||||||||| |||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16615637 tcggcccctttcttagtttcactctcatatggctcctctgaatcatcaacatttatgtttggatactgcacaagaatatcgagaatgacc 16615726  T

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Target: chr6; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 16873165 - 16872973
Alignment:
Q  48 gtgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaannnnnnnn--aagatagtaactaagtttccccaaacacgaatcgatccgtta 145  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||           |||| || ||||||||||||||||||||||||||||||||||    
T  16873165 gtgtgtgaggatctatgcattgcaggctcttgaaaaactcagcctcatttttttttttaagaaagaaactaagtttccccaaacacgaatcgatccgtta 16873066  T
Q  146 tagtcggccccttacttagtttcattctcatctggctcctctgaatcatcaacatttaagtttggatactgcacaagaatatcgagaatgacc 238  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  16873065 tagtcggcccctttcttagtttcattctcatctggctcctctgaatcatcaacatttatgtttggatattgcacaagaatatcgagaatgacc 16872973  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 238
Target Start/End: Complemental strand, 16571204 - 16571077
Alignment:
Q  112 aactaagtttccccaaacacgaatcgatccgttatagtcggcccctta-cttagtttcattctcatctggctcctctgaatcatcaacatttaagtttgg 210  Q
    ||||||| ||| |||||||||||| | |||||||||||||| |||||| |||||||| |||||||||||||||  ||||||||||| | |||| ||||||    
T  16571204 aactaagcttcgccaaacacgaattggtccgttatagtcggacccttaacttagtttaattctcatctggctcaactgaatcatcagcctttatgtttgg 16571105  T
Q  211 atactgcacaagaatatcgagaatgacc 238  Q
     | |||| | ||||||||||||||||||    
T  16571104 ttgctgcgctagaatatcgagaatgacc 16571077  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 16579942 - 16579914
Alignment:
Q  17 gtttgtagtaaatgagttcaaccctcatc 45  Q
    |||||||||||||||||||||||||||||    
T  16579942 gtttgtagtaaatgagttcaaccctcatc 16579914  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 16615438 - 16615466
Alignment:
Q  17 gtttgtagtaaatgagttcaaccctcatc 45  Q
    |||||||||||||||||||||||||||||    
T  16615438 gtttgtagtaaatgagttcaaccctcatc 16615466  T

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Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 49 - 238
Target Start/End: Complemental strand, 32791312 - 32791123
Alignment:
Q  49 tgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaannnnnnnnaagatagtaactaagtttccccaaacacgaatcgatccgttatag 148  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||||  |        | || || ||||||||||||| |||||||||||| ||||||||||    
T  32791312 tgtgtgaggatctattcattgcatgctcttgaaaaactcagcatatattttttctatgaaagcaactaagtttcccgaaacacgaatcggtccgttatag 32791213  T
Q  149 tcggccccttacttagtttcattctcatctggctcctctgaatcatcaacatttaagtttggatactgcacaagaatatcgagaatgacc 238  Q
    | |||||||| |||| |||||||||| ||| ||||  ||||||||||||| |||| |||||| | |||||| |||||||| |||||||||    
T  32791212 ttggcccctttcttaatttcattctcttcttgctcaactgaatcatcaacctttatgtttgggtgctgcaccagaatatcaagaatgacc 32791123  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 236323 - 236513
Alignment:
Q  48 gtgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaannnnnnnnaagatagtaactaagtttccccaaacacgaatcgatccgttata 147  Q
    ||||||| ||||| ||||| |||| ||||||||| ||||| ||||| |        |||| || ||||||||| ||||| ||| |||| | ||||| |||    
T  236323 gtgtgtggggatcaatgcactgcaagctcttgaaaaactcggcatctattttttctaagaaagcaactaagttaccccagacatgaatgggtccgtcata 236422  T
Q  148 gtcggccccttacttagtttcattctcatctggctcctctgaatcatcaacatttaagtttggatactgcacaagaatatcgagaatgacc 238  Q
    |||  |||||| ||||||||||||||| ||| ||||| | ||||||||||| |||| |||||| | |||||| ||||| ||||| ||||||    
T  236423 gtcatcccctttcttagtttcattctcgtctagctccacagaatcatcaacctttatgtttgggtgctgcacgagaatgtcgaggatgacc 236513  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 7389482 - 7389292
Alignment:
Q  48 gtgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaannnnnnnnaagatagtaactaagtttccccaaacacgaatcgatccgttata 147  Q
    ||||||| ||||| ||||| |||| ||||||||| ||||| ||||| |        |||| || ||||||||| ||||| |||  ||| | |||||||||    
T  7389482 gtgtgtggggatcaatgcactgcaagctcttgaaaaactcggcatctattttttctaagaaagcaactaagttgccccagacattaatgggtccgttata 7389383  T
Q  148 gtcggccccttacttagtttcattctcatctggctcctctgaatcatcaacatttaagtttggatactgcacaagaatatcgagaatgacc 238  Q
    |||  |||||| ||||||||||||||| ||| ||||| | ||||||||||| |||| |||||| | |||||| ||||| ||||||||||||    
T  7389382 gtcatcccctttcttagtttcattctcgtctagctccacagaatcatcaacctttatgtttgggtgctgcacgagaatgtcgagaatgacc 7389292  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 48300749 - 48300939
Alignment:
Q  48 gtgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaannnnnnnnaagatagtaactaagtttccccaaacacgaatcgatccgttata 147  Q
    ||||||| ||||||||||| |||| ||||||||| || || ||||| |        |||| || ||||||||| ||||| ||| |||| | ||||| |||    
T  48300749 gtgtgtggggatctatgcactgcaagctcttgaaaaattcggcatctattttttctaagaaagcaactaagttgccccagacatgaatgggtccgtcata 48300848  T
Q  148 gtcggccccttacttagtttcattctcatctggctcctctgaatcatcaacatttaagtttggatactgcacaagaatatcgagaatgacc 238  Q
    |||  |||||| ||||| ||||||||||||| | ||| | ||||||||||| |||| |||||| | |||||| |||||||| |||||||||    
T  48300849 gtcatcccctttcttagattcattctcatctagttccacagaatcatcaacctttatgtttgggtgctgcacgagaatatcaagaatgacc 48300939  T

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Target: scaffold0256 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 12505 - 12625
Alignment:
Q  115 taagtttccccaaacacgaatcgatccgtta-tagtcggccccttacttagtttcattctcatctggctcctctgaatcatcaacatttaagtttggata 213  Q
    |||| |||||||||||||||| | | ||||| ||||||| ||||| |||||||| ||||||||| |||||  ||||||||| | | |||| |||||| |     
T  12505 taagcttccccaaacacgaattggtacgttattagtcggaccctttcttagtttaattctcatcaggctcaactgaatcataagcctttatgtttggttg 12604  T
Q  214 ctgcacaagaatatcgagaat 234  Q
    |||| | |||||||| |||||    
T  12605 ctgcgctagaatatctagaat 12625  T

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Target: scaffold0256; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 14937 - 14998
Alignment:
Q  176 tctggctcctctgaatcatcaacatttaagtttggatactgcacaagaatatcgagaatgac 237  Q
    |||||||||| ||||||||||||| ||| |||||||| ||||  |||||||| |||||||||    
T  14937 tctggctcctgtgaatcatcaacagttatgtttggatgctgccgaagaatattgagaatgac 14998  T

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Target: scaffold0256; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 14842 - 14880
Alignment:
Q  48 gtgtgtgaggatctatgcattgcaggctcttgaagaact 86  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  14842 gtgtgtgaggatctatgcgttgcaggctcttgaaaaact 14880  T

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