View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5781-Insertion-2 (Length: 595)
Name: NF5781-Insertion-2
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781-Insertion-2 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 74 - 595
Target Start/End: Complemental strand, 35433933 - 35433403
Alignment:
| Q |
74 |
ttatattgaagaactaggtaatataaaaaattgatgataagggacaaatggagtagttgaagcttcaaattcaatgtggtatttcttgaaaggacttggc |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35433933 |
ttatattgaagaactaggtaatataaaaaattgatgataagggacaaatggagtagttgaagcttcaaattcaatgtggtatttcttgaaaggacttggc |
35433834 |
T |
|
| Q |
174 |
tccaataatttactgtttttctcatnnnnnnnggttttagctagaaaattgctaatnnnnnnngggtttagctagaaaattaaatggtttagtagttacg |
273 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35433833 |
tccaataattgactgtttttctcataaaaaaaggttttagctagaaaattgctaataaaaaaagggtttagctagaaaattaaatggtttagtagttacg |
35433734 |
T |
|
| Q |
274 |
atcttagttctccttaagtaagaattcatatttgaa-tttgatgataaaagagctctatgtccttaaggacataaacttaaagtg------ttcaaatct |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35433733 |
atcttagttctccttaagtaagaattcatatttaaattttgatgataaaagagctctatgtccttaaggacataaacttaaagtgttcaacttcaaatct |
35433634 |
T |
|
| Q |
367 |
tttatgataatttttggatggatacaaagatttaaacactttatttaaaagttatgctatttgttccgacaaaatacgcttcgaaaatttcacgaatcac |
466 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
35433633 |
tttatgataatttttggatgaatacgaagatttaaacactttatttaaaagttatgctatttgttccgacaaaacacgcctcgaaaatttcacgaatcaa |
35433534 |
T |
|
| Q |
467 |
tttcatccgtaggatcttttgctggacttcaatcatggttagtaaaatattaaaagtagggcagggtaataagaaaaatagac--atcatgaatagttcg |
564 |
Q |
| |
|
||| | |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
35433533 |
tttgacccgtaggatcttttgctggactggaatcatggttggtaaaatattaaaagtagggcagggtaataagaaaaatagacatatcatgaataattcg |
35433434 |
T |
|
| Q |
565 |
tgatcaacctggtcgctatagttagtatttc |
595 |
Q |
| |
|
||||||||||| || |||||||||||||||| |
|
|
| T |
35433433 |
tgatcaacctgatccctatagttagtatttc |
35433403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 455 - 537
Target Start/End: Complemental strand, 32556219 - 32556137
Alignment:
| Q |
455 |
ttcacgaatcactttcatccgtaggatcttttgctggacttcaatcatggttagtaaaatattaaaagtagggcagggtaata |
537 |
Q |
| |
|
||||||||||||| | | ||||| ||| |||||||||||| |||||||| | |||| ||||||||||| ||||||||||||| |
|
|
| T |
32556219 |
ttcacgaatcactgtgagccgtatgattttttgctggactgaaatcatgggtggtaatatattaaaagtggggcagggtaata |
32556137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University