View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5781-Insertion-3 (Length: 563)
Name: NF5781-Insertion-3
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 8 - 523
Target Start/End: Complemental strand, 47880373 - 47879858
Alignment:
| Q |
8 |
aaagttagttacagttaacagaaattagttatggagcgacacgttcgtttttaacttcatcgagttttgcggtgataaaaataaaaattaacatcatttt |
107 |
Q |
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| T |
47880373 |
aaagttagttacagttagcagaaattagttatggagcgacacattcgtttttaacttcatcgagttttgcggtgataaaaataaaaattaacatcatttt |
47880274 |
T |
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| Q |
108 |
gtatcggagaacatgttggtttttaggacggacatacttaaacacgagtcttgctaacttgtgtcctttgttaaagcctacagtttacaacatgaaacac |
207 |
Q |
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| T |
47880273 |
gtatcggagaacatgttggtttttaggacggacatacttaaacacgagtcttgctaacttgtgtcctttgttaaagcctacagtttacaacatgaaacac |
47880174 |
T |
|
| Q |
208 |
tcgattggcagagttgatactgacccagaagttaaaaatttcccctttatgttgcaaatactgtgcaacgacattcgtccnnnnnnnggtgcactaatga |
307 |
Q |
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| T |
47880173 |
tcgattggcagagttgatactgacccagaagttaaaaatttcccctttatgttgcaaatactgtgcaacgacattcgtcctttttttggtgcactaatga |
47880074 |
T |
|
| Q |
308 |
tggacaaagtttggagatatactactgcaaaacaattccttgcaatatatataggtcagttgaaattattggctgaaactcaactgaaacaacgaataag |
407 |
Q |
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| T |
47880073 |
tggacaaagtttggagatatactactgcaaaacaattccttgcaatatatattggtcagttgaaattattggctgaaactcaactgaaacgacggataag |
47879974 |
T |
|
| Q |
408 |
aaatgtagtgtttacagttccagtttccttcagttgatctcagctaatccgaactcatcgcacttgtgcgatgtccaatcttcatgttctcaggctgatg |
507 |
Q |
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| T |
47879973 |
aaatgtagtgtttacagttccagtttccttcagttgacctcagctaatccgaactcatcgcacttgtgcgatgtccaatcttcatgttctcaggctgatg |
47879874 |
T |
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| Q |
508 |
tatcaactaactgcag |
523 |
Q |
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| T |
47879873 |
tatcaactaactgcag |
47879858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 441
Target Start/End: Complemental strand, 44728393 - 44728329
Alignment:
| Q |
377 |
tggctgaaactcaactgaaacaacgaataagaaatgtagtgtttacagttccagtttccttcagt |
441 |
Q |
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| T |
44728393 |
tggctgaaactgaactgaaacaacctataagaaatgtagtgtttattattccagtttcgttcagt |
44728329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 441
Target Start/End: Original strand, 39241337 - 39241398
Alignment:
| Q |
380 |
ctgaaactcaactgaaacaacgaataagaaatgtagtgtttacagttccagtttccttcagt |
441 |
Q |
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|||||||||| ||||||| || |||||||||||| ||| |||||||||||||||| |||||| |
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| T |
39241337 |
ctgaaactcatctgaaacgaccaataagaaatgttgtgcttacagttccagtttcattcagt |
39241398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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