View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5781-Insertion-4 (Length: 497)

Name: NF5781-Insertion-4
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5781-Insertion-4
NF5781-Insertion-4
[»] chr5 (5 HSPs)
chr5 (8-467)||(39952467-39952927)
chr5 (98-219)||(23920117-23920238)
chr5 (196-291)||(22917308-22917404)
chr5 (196-294)||(13596832-13596931)
chr5 (201-267)||(1685106-1685172)
[»] chr3 (3 HSPs)
chr3 (291-467)||(50416814-50416993)
chr3 (201-281)||(42614280-42614360)
chr3 (233-294)||(41053754-41053816)
[»] scaffold0001 (1 HSPs)
scaffold0001 (98-276)||(12729-12907)
[»] chr8 (5 HSPs)
chr8 (96-266)||(24847957-24848127)
chr8 (98-219)||(30344377-30344498)
chr8 (182-294)||(28940743-28940856)
chr8 (203-294)||(2680265-2680357)
chr8 (239-294)||(30344500-30344557)
[»] chr6 (11 HSPs)
chr6 (98-219)||(18985279-18985400)
chr6 (170-266)||(8746751-8746847)
chr6 (201-294)||(2627674-2627763)
chr6 (235-294)||(11681699-11681760)
chr6 (202-294)||(22978347-22978435)
chr6 (202-294)||(23809968-23810056)
chr6 (199-281)||(34218741-34218820)
chr6 (196-267)||(22721094-22721165)
chr6 (215-294)||(1363155-1363235)
chr6 (201-281)||(11168835-11168915)
chr6 (98-150)||(11682650-11682702)
[»] chr7 (8 HSPs)
chr7 (98-236)||(25350576-25350714)
chr7 (98-236)||(25356270-25356408)
chr7 (216-281)||(33097879-33097944)
chr7 (196-291)||(25731043-25731139)
chr7 (216-276)||(31299417-31299477)
chr7 (233-294)||(33105296-33105358)
chr7 (215-267)||(4478967-4479019)
chr7 (215-292)||(21895080-21895159)
[»] chr2 (4 HSPs)
chr2 (184-293)||(25123459-25123571)
chr2 (203-294)||(45003691-45003783)
chr2 (215-281)||(15084343-15084409)
chr2 (204-256)||(44800576-44800628)
[»] chr4 (4 HSPs)
chr4 (203-294)||(5482954-5483046)
chr4 (203-294)||(1694811-1694903)
chr4 (202-281)||(36678774-36678851)
chr4 (217-281)||(1967467-1967531)
[»] chr1 (3 HSPs)
chr1 (196-294)||(29693301-29693400)
chr1 (201-294)||(52037420-52037514)
chr1 (201-281)||(13624230-13624309)


Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 8 - 467
Target Start/End: Original strand, 39952467 - 39952927
Alignment:
Q  8 ctttccgcagatgtcaatggatatggtgtgagtagattgaactctggttttgttggtgctctaatttcgctaatcacttcatttttgg-agcatctatat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  39952467 ctttccgcagatgtcaatggatatggtgtgagtagattgaactctggttttgttggtgctttaatttcgctaatcacttcatttttggcagcatctatat 39952566  T
Q  107 ttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggattatgcgacc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39952567 ttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgctttagaccatgcatcacaaatattcggattatgcgacc 39952666  T
Q  207 ttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaaatgagaataaat 306  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39952667 ttcgttctcaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccgttagagcaaatttttaaaaagtacgtaattcaaatgagaataaat 39952766  T
Q  307 catcgattgtataaactttgttttgatggttaacatcagaaaccatagcttgcaacatatttgggaaagactaaaagtttggatatatctgataatgtga 406  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39952767 catcgattgtataaactttgttgtgatggttaacatcagaaaccatagcttgcaacatatttgggaaagactaaaagtttggatatatctgataatgtga 39952866  T
Q  407 catggatgtgtctattattttagtgatatattgatgagaaagctagcatctaacttaacta 467  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39952867 catggatgtgtctattattttagtgatatattgatgtgaaagctagcatctaacttaacta 39952927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 23920117 - 23920238
Alignment:
Q  98 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 197  Q
    ||||||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  23920117 catctatatttctgctggagtacattatgtacgcaatgacaataattgttatgctatctttaatgccatgtcttagaccatgcatcacaaatattcggat 23920216  T
Q  198 tatgcgaccttcgttcccaaat 219  Q
    |||| ||||||||||| |||||    
T  23920217 tatgtgaccttcgttcacaaat 23920238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 196 - 291
Target Start/End: Original strand, 22917308 - 22917404
Alignment:
Q  196 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaatt 291  Q
    ||||||| |||||||||| |||||||| ||| |||||||||||   ||||||||||||||| ||| |||||||||| |||||||||| |||||||||    
T  22917308 attatgcaaccttcgttctcaaatttacgaagaatggcaatgtcgcgtaatttgaacatctatcctttagagcaaattttttaaaaattacgtaatt 22917404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 196 - 294
Target Start/End: Original strand, 13596832 - 13596931
Alignment:
Q  196 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaa-atttttaaaaagtacgtaattcaa 294  Q
    ||||||| |||||||||| |||||||| |||  ||||||||||    |||||||||||||||||| |||||||||  |||||||||| ||||||||||||    
T  13596832 attatgcaaccttcgttctcaaatttacgaagcatggcaatgtcgcataatttgaacatctctcctttagagcaatttttttaaaaaatacgtaattcaa 13596931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 1685172 - 1685106
Alignment:
Q  201 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag 267  Q
    ||||||||||||| |||| ||| ||| ||| ||||||||| ||||||||||||||||||| ||||||    
T  1685172 gcgaccttcgttctcaaaattacgaagaatagcaatgttccgtaatttgaacatctctcctttagag 1685106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 291 - 467
Target Start/End: Complemental strand, 50416993 - 50416814
Alignment:
Q  291 tcaaatgagaataaatcatcgattgtataaactttgttttgatggttaacatcagaaaccatagcttgcaacatatttgggaaagactaaaagtttggat 390  Q
    |||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||| ||    
T  50416993 tcaaatgagaataaattatagattgtataaactttgttgtgatggttaacatcagaaaccattgctttcaacatatctgggaaagactaaaagtttgcat 50416894  T
Q  391 atatctgataatgtgacatggatgtgtc---tattattttagtgatatattgatgagaaagctagcatctaacttaacta 467  Q
    ||||||||||| ||||||||| ||||||   ||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  50416893 atatctgataacgtgacatggctgtgtcatttattattttagtgttatattgatgtgaaagctagcatctaacttaacta 50416814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 281
Target Start/End: Complemental strand, 42614360 - 42614280
Alignment:
Q  201 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 281  Q
    ||||||||||||| |||||||  ||| |||  |||||||  ||||||||||||||||| | ||| || |||||||||||||    
T  42614360 gcgaccttcgttctcaaattttcgaagaataacaatgtttcgtaatttgaacatctcttctttaaagtaaatttttaaaaa 42614280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 41053754 - 41053816
Alignment:
Q  233 caatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaattcaa 294  Q
    |||||||| |||||||||||||||| |  |||||||||| |||||||||| || |||||||||    
T  41053754 caatgttccgtaatttgaacatctcacatttagagcaaattttttaaaaaatatgtaattcaa 41053816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 98 - 276
Target Start/End: Original strand, 12729 - 12907
Alignment:
Q  98 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 197  Q
    |||||| |||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||  ||||| ||||||||||||||||||||||    
T  12729 catctacatttctgctgcagtacattatgtatgtaatgacaatgattgttatgttatcttttatgccatgccttagatcatgcatcacaaatattcggat 12828  T
Q  198 tatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt 276  Q
    ||||||||||||||||  ||||||| ||| ||||||||| ||   | |||||||||||||||| |||||| || |||||    
T  12829 tatgcgaccttcgttcttaaatttacgaagaatggcaatatttcctcatttgaacatctctcctttagagtaatttttt 12907  T

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Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 96 - 266
Target Start/End: Complemental strand, 24848127 - 24847957
Alignment:
Q  96 agcatctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcgg 195  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||  |||||||| ||||||| |||  |||  ||||||||||||||  ||||||||||    
T  24848127 agcatctatatttgtgctgcagtacgttatgtatgtaatgacaatggttgttatgttatctttgatgttatgccttagaccatgcatcgtaaatattcgg 24848028  T
Q  196 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattaga 266  Q
    |||||||||||||||||| |||||||| ||| |||| ||||||| | |||||||||||||||||| |||||    
T  24848027 attatgcgaccttcgttctcaaatttacgaagaatgacaatgttttataatttgaacatctctcctttaga 24847957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 30344377 - 30344498
Alignment:
Q  98 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 197  Q
    ||||||||||| || || ||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30344377 catctatatttctgttgtagtacattatgtacgcaatgacaataattgttatgctatcttttatgccatgtcttagaccatgcatcacaaatattcggat 30344476  T
Q  198 tatgcgaccttcgttcccaaat 219  Q
    |||| ||||||| ||| |||||    
T  30344477 tatgtgaccttcattcacaaat 30344498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 28940856 - 28940743
Alignment:
Q  182 tcacaaatattcggattatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaa 280  Q
    |||||||||||| ||||||| |||||| |||| ||| |||| ||| |||| |||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  28940856 tcacaaatattcagattatgggacctttgttctcaagtttacgaagaatgacaatgttctgtaatttgaacatctctcctttagaacaaattttttaaaa 28940757  T
Q  281 agtacgtaattcaa 294  Q
    ||||||||||||||    
T  28940756 agtacgtaattcaa 28940743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 203 - 294
Target Start/End: Complemental strand, 2680357 - 2680265
Alignment:
Q  203 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttta-aaaagtacgtaattcaa 294  Q
    ||||||||||| |||||||||||| || | |||| ||| ||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||    
T  2680357 gaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaatttttaaaaaaatacgtaattcaa 2680265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 30344500 - 30344557
Alignment:
Q  239 tctgtaatttgaacatctctccattagagcaaa--tttttaaaaagtacgtaattcaa 294  Q
    |||||||||||||||||||||| ||||||| ||  ||||| |||| ||||||||||||    
T  30344500 tctgtaatttgaacatctctcctttagagctaatttttttgaaaaatacgtaattcaa 30344557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 18985400 - 18985279
Alignment:
Q  98 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 197  Q
    ||||||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  18985400 catctatatttctgctggagtacattatgtacgcaatgacaataattgttatgctatctttaatgccatgtcttagaccatgcatcacaaatattcggat 18985301  T
Q  198 tatgcgaccttcgttcccaaat 219  Q
    |||| ||||||||||| |||||    
T  18985300 tatgtgaccttcgttcacaaat 18985279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 8746847 - 8746751
Alignment:
Q  170 ttagaccatgcatcacaaatattcggattatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattaga 266  Q
    ||||||||| ||||  |||||||| |||||||||||||| |||| |||||||| ||| |||| ||||||||  ||||||||||||| |||| |||||    
T  8746847 ttagaccatacatcgtaaatattcagattatgcgacctttgttctcaaatttacgaagaatgacaatgttccataatttgaacatccctcctttaga 8746751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 201 - 294
Target Start/End: Complemental strand, 2627763 - 2627674
Alignment:
Q  201 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaa 294  Q
    ||||||||||||| |||||||| ||| ||| |||||||| |||||||||||||||||||   |||||||| ||||| |||| ||||||||||||    
T  2627763 gcgaccttcgttctcaaatttacgaagaatagcaatgttatgtaatttgaacatctctc---tagagcaatttttttaaaa-tacgtaattcaa 2627674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 11681760 - 11681699
Alignment:
Q  235 atgttctgtaatttgaacatctctccattagagcaaattttt--aaaaagtacgtaattcaa 294  Q
    |||||||||||||||||||||||||| |||||| || |||||  ||||||||||||||||||    
T  11681760 atgttctgtaatttgaacatctctcctttagagtaatttttttaaaaaagtacgtaattcaa 11681699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 294
Target Start/End: Complemental strand, 22978435 - 22978347
Alignment:
Q  202 cgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaa 294  Q
    |||||||||||| |||||||| ||| ||   ||||||| |||||||||||||||||||   |||||||| ||||| |||| ||||||||||||    
T  22978435 cgaccttcgttctcaaatttacgaagaacaacaatgttatgtaatttgaacatctctc---tagagcaatttttttaaaa-tacgtaattcaa 22978347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 294
Target Start/End: Original strand, 23809968 - 23810056
Alignment:
Q  202 cgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaa 294  Q
    |||||||||||| |||||||| ||| ||   ||||||| |||||||||||||||||||   |||||||| ||||| |||| ||||||||||||    
T  23809968 cgaccttcgttctcaaatttacgaagaacaacaatgttatgtaatttgaacatctctc---tagagcaatttttttaaaa-tacgtaattcaa 23810056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 281
Target Start/End: Original strand, 34218741 - 34218820
Alignment:
Q  199 atgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 281  Q
    ||||||||||||||  | |||||||||| |||  |||| ||| ||||||||||||||||||| |   ||||||||||||||||    
T  34218741 atgcgaccttcgttttcgaatttatgaagaattacaatattccgtaatttgaacatctctcctt---agcaaatttttaaaaa 34218820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 22721094 - 22721165
Alignment:
Q  196 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag 267  Q
    ||||||| |||| ||||| |||||| | ||| |||||||||||   ||||||||||||||||||| ||||||    
T  22721094 attatgcaacctacgttctcaaattaacgaagaatggcaatgtcgcgtaatttgaacatctctcctttagag 22721165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 294
Target Start/End: Original strand, 1363155 - 1363235
Alignment:
Q  215 caaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag-caaatttttaaaaagtacgtaattcaa 294  Q
    |||||||| ||| |||  |||||||| ||||||||||||| ||||| ||||||  ||| ||||||||| || |||||||||    
T  1363155 caaatttacgaagaataacaatgttccgtaatttgaacatatctcctttagagtaaaaattttaaaaaatatgtaattcaa 1363235  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 281
Target Start/End: Original strand, 11168835 - 11168915
Alignment:
Q  201 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 281  Q
    ||||||||||||| |||| ||| ||| |||   ||||||| |||||||||||||| |||  |||||| || ||||||||||    
T  11168835 gcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatccctcttttagagaaattttttaaaaa 11168915  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 11682702 - 11682650
Alignment:
Q  98 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatg 150  Q
    ||||||||| | || |||||||||||||||||| |||||||||| || |||||    
T  11682702 catctatatgtgtgttgcagtacattatgtatgaaatgacaatagttattatg 11682650  T

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Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 98 - 236
Target Start/End: Complemental strand, 25350714 - 25350576
Alignment:
Q  98 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 197  Q
    ||||||||||||||||| |||||||||| |||||||| ||||| ||||||||| ||| ||||||| ||||  ||||||||||||||||||||||||||||    
T  25350714 catctatatttatgctgtagtacattatctatgtaataacaatgattgttatgttattttttatgtcatgccttagaccatgcatcacaaatattcggat 25350615  T
Q  198 tatgcgaccttcgttcccaaatttatgaaaaatggcaat 236  Q
    |||||| ||||||||| |||||||| ||| |||| ||||    
T  25350614 tatgcgtccttcgttctcaaatttacgaagaatgacaat 25350576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 98 - 236
Target Start/End: Complemental strand, 25356408 - 25356270
Alignment:
Q  98 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 197  Q
    ||||||||||||||||| |||||||||| |||||||| ||||| ||||||||| ||| ||||||| ||||  ||||||||||||||||||||||||||||    
T  25356408 catctatatttatgctgtagtacattatctatgtaataacaatgattgttatgttattttttatgtcatgccttagaccatgcatcacaaatattcggat 25356309  T
Q  198 tatgcgaccttcgttcccaaatttatgaaaaatggcaat 236  Q
    |||||| ||||||||| |||||||| ||| |||| ||||    
T  25356308 tatgcgtccttcgttctcaaatttacgaagaatgacaat 25356270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 33097944 - 33097879
Alignment:
Q  216 aaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 281  Q
    ||||||| ||| |||| |||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  33097944 aaatttacgaagaatgacaatgttccgtaatttgaacatctctcctttagagcaaattttttaaaa 33097879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 291
Target Start/End: Original strand, 25731043 - 25731139
Alignment:
Q  196 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaa-atttttaaaaagtacgtaatt 291  Q
    ||||||| |||||||||| |||||||| ||| | || ||||||   ||||||||||||||||||| |||||||||  |||||||||| |||||||||    
T  25731043 attatgcaaccttcgttctcaaatttacgaagactgacaatgtcgcgtaatttgaacatctctcctttagagcaatttttttaaaaaatacgtaatt 25731139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 31299417 - 31299477
Alignment:
Q  216 aaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt 276  Q
    ||||||||||| |||| |||||||| ||||||| ||||||||||| ||||| |||||||||    
T  31299417 aaatttatgaagaatgacaatgttccgtaattttaacatctctcctttagaacaaattttt 31299477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 33105296 - 33105358
Alignment:
Q  233 caatgttctgtaatttgaacatctctccattagagcaaattttt-aaaaagtacgtaattcaa 294  Q
    |||||||| ||||||||||||||||||  || |||||||||||| ||||| ||||||||||||    
T  33105296 caatgttccgtaatttgaacatctctcttttggagcaaatttttaaaaaaatacgtaattcaa 33105358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 4479019 - 4478967
Alignment:
Q  215 caaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag 267  Q
    |||||||| ||| | | |||||||||||||||||||| |||||||| ||||||    
T  4479019 caaatttacgaagattagcaatgttctgtaatttgaatatctctcctttagag 4478967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 292
Target Start/End: Original strand, 21895080 - 21895159
Alignment:
Q  215 caaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa--tttttaaaaagtacgtaattc 292  Q
    |||||||| ||| ||| | ||||||| ||||||||||||| ||||| |||||| |||  |||||||||| || |||||||    
T  21895080 caaatttacgaagaatagtaatgttccgtaatttgaacatatctcctttagagtaaaattttttaaaaaatatgtaattc 21895159  T

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Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 184 - 293
Target Start/End: Complemental strand, 25123571 - 25123459
Alignment:
Q  184 acaaatattcggattatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt---aaaa 280  Q
    |||||| |||||||||||| |||||||||| ||| |||| ||| |||| |||||||| ||||||||||||||||||  || ||||||||||||   ||||    
T  25123571 acaaatgttcggattatgcaaccttcgttctcaagtttacgaagaatgacaatgttccgtaatttgaacatctctcatttggagcaaatttttttaaaaa 25123472  T
Q  281 agtacgtaattca 293  Q
    | |||||||||||    
T  25123471 aatacgtaattca 25123459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 294
Target Start/End: Complemental strand, 45003783 - 45003691
Alignment:
Q  203 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttt-taaaaagtacgtaattcaa 294  Q
    ||||||||||| |||||||||||| || | |||| ||| ||||||||||||||| ||| ||||||||||||||  ||||| ||||||||||||    
T  45003783 gaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaattttaaaaaaaatacgtaattcaa 45003691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 15084409 - 15084343
Alignment:
Q  215 caaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 281  Q
    |||||||| ||| ||| ||||||||| ||||||||||||| ||||| |||||| ||| |||||||||    
T  15084409 caaatttacgaagaatagcaatgttccgtaatttgaacatatctcctttagagtaaaattttaaaaa 15084343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 44800576 - 44800628
Alignment:
Q  204 accttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatct 256  Q
    |||||||||| |||||||| ||| ||| ||||||||  |||||||||||||||    
T  44800576 accttcgttctcaaatttacgaagaatagcaatgtttcgtaatttgaacatct 44800628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 203 - 294
Target Start/End: Original strand, 5482954 - 5483046
Alignment:
Q  203 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt-aaaaagtacgtaattcaa 294  Q
    ||||||||||| |||||||||||| || | |||| ||| ||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||    
T  5482954 gaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaatttttaaaaaaatacgtaattcaa 5483046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 203 - 294
Target Start/End: Original strand, 1694811 - 1694903
Alignment:
Q  203 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaag-tacgtaattcaa 294  Q
    ||||||||||| |||||||| ||| ||| ||||||||| || |||||||||| ||||| ||||||||| ||||| ||||| | ||||||||||    
T  1694811 gaccttcgttctcaaatttacgaagaatagcaatgttccgtgatttgaacatatctcctttagagcaatttttttaaaagatgcgtaattcaa 1694903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 36678851 - 36678774
Alignment:
Q  202 cgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 281  Q
    |||||||||||| |||||||| ||||||| |||||||| |||||||| |||||||||   |||||| |||||||||||||    
T  36678851 cgaccttcgttctcaaatttacgaaaaatagcaatgttttgtaatttaaacatctct--tttagagtaaatttttaaaaa 36678774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 1967531 - 1967467
Alignment:
Q  217 aatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 281  Q
    |||||| ||| |||| |||||||| ||||||||||||| ||||  ||| ||||||||||||||||    
T  1967531 aatttacgaagaatgacaatgttccgtaatttgaacatttctcttttaaagcaaatttttaaaaa 1967467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 196 - 294
Target Start/End: Original strand, 29693301 - 29693400
Alignment:
Q  196 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaattcaa 294  Q
    ||||||| |||||||||| |||||||| ||| |||||||||||   ||||||||||||||||| | ||||| |||| |||||||||| ||||||||||||    
T  29693301 attatgcaaccttcgttctcaaatttacgaagaatggcaatgtcgcgtaatttgaacatctcttctttagaacaaattttttaaaaaatacgtaattcaa 29693400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 294
Target Start/End: Complemental strand, 52037514 - 52037420
Alignment:
Q  201 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaa-atttttaaaaagtacgtaattcaa 294  Q
    ||||||||||||| |||| ||| ||| ||| ||||||||| ||||||||||||||||||| |||||| ||  |||||||||| ||| ||||||||    
T  52037514 gcgaccttcgttctcaaaattacgaagaatagcaatgttccgtaatttgaacatctctcctttagaggaatttttttaaaaaatacataattcaa 52037420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 201 - 281
Target Start/End: Original strand, 13624230 - 13624309
Alignment:
Q  201 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 281  Q
    ||||||||||||| |||| ||| ||| ||| | ||||||| ||||||||||||||||||| |||||| |||||||||||||    
T  13624230 gcgaccttcgttctcaaaattacgaagaataggaatgttccgtaatttgaacatctctcctttagag-aaatttttaaaaa 13624309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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