View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5781-Insertion-5 (Length: 406)
Name: NF5781-Insertion-5
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 8 - 406
Target Start/End: Original strand, 9237182 - 9237580
Alignment:
| Q |
8 |
ttcatagcatcacttttgctaaaaataatgacattcatgcctttagacaatttttgttttcaaacgtttacaaaatcggctcgtttgacaaatgggaacg |
107 |
Q |
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| T |
9237182 |
ttcatagcatcacttttgctaaaaataatgacattcatgcctttagacaatttttgttttcaaacgtttacaaaatcggctcgtttgacaaatgggaacg |
9237281 |
T |
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| Q |
108 |
caactatcaagttggtaaaaccatgtagaaaatcgtggtatatcacaaactcagactatacgactagtcgactatcatcactgaaccataacaataacga |
207 |
Q |
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| T |
9237282 |
caactatcaagttggtaaaaccatgtagaaaatcgtggtatatcacaaactcagactatacgactagtcgactatcatcactgaaccataacaataacga |
9237381 |
T |
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| Q |
208 |
ctctaattgccaccaacaagcatacgaaatagacaaatggtaaatatgatgtcatgactcgtgactgctttagctaaagagatagagaaagaagaaaatg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9237382 |
ctctaattgccaccaacaagcatacgaaatagacaaatggtaaatatgatgtcatgactcgtgactgctttagctaaagagatagagaaagaagaaaatg |
9237481 |
T |
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| Q |
308 |
gatcccatgcagaggactttaaattaaagttcaacatttatctgtcttataatgtaaaaccaatatgcatgcaaaaaatattaagtctcacctgtctgt |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9237482 |
gatcccatgcagaggactttaaattaaagttcaacatttatctgtcttataatgtaaaaccaatatgcatgcaaaaaatattaagtctcacctgtctgt |
9237580 |
T |
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