View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5781_high_1 (Length: 688)
Name: NF5781_high_1
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781_high_1 |
 | |
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| [»] scaffold0521 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 18 - 510
Target Start/End: Original strand, 35075539 - 35076031
Alignment:
| Q |
18 |
agtggttgattgctttgatgcaaaatcgcatactcactctctaacattgataaaaaagaatgaaccctaattgtttgtcaaaggaatttcagagatatca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35075539 |
agtggttgattgctttgatgcaaaatcgcatactcactctctaacattgataaaaaagaatgaaccctaattgtttgtcaaaggaatttcagagatatca |
35075638 |
T |
|
| Q |
118 |
attctactatatagtttttgctatattatatgtcaacaatataaatgtttaaaatagtgttgttttttgcttcaatctatatatcagtttgaaaataaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
35075639 |
attctactatatagtttttgctatattatatgtcaacaatataaatgtttaaaatagtgttgttttttacttcaatctatatatcagtttgaaaataaat |
35075738 |
T |
|
| Q |
218 |
agtggtgttttttgttatatgcctataaaaaatagttgtgcaaggacattgaaattaccaacaattttgcttatttcattggaatgtattgtgctctcaa |
317 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
35075739 |
agtggtgttttttgttatctgcctataaaaaatagttgtgcaaggacattgaaaataccaacaattttgcatatttcattggaatgtattgtgctctcaa |
35075838 |
T |
|
| Q |
318 |
gttttttagtaaccgagtttctgtcatattgttttgctggtgataaaatgaatttgcattgtgcatctgcactacatgggtgttaatataaataaatatt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35075839 |
gttttttagtaaccgagtttctgtcatattgttttgctggtgataaaatgaatttgcattgtgcatctgcactacatgggtgttaatataaataaatatt |
35075938 |
T |
|
| Q |
418 |
gtagattttgttgcatgttaataagtgtaggttgtgtggttgtttctcgcttttgtgtgttgtctttaatctctataccttttagtgtggtgt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35075939 |
gtagattttgttgcatgttaataagtgtaggttgtgtggttgtttctcacttttgtgtgttgtctttaatctctataccttttagtgtggtgt |
35076031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 504
Target Start/End: Original strand, 35101652 - 35102140
Alignment:
| Q |
18 |
agtggttgattgctttgatgcaaaatcgcatactcactctctaacattgataaaaaagaatgaaccctaattgtttgtcaaaggaatttcagagatatca |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35101652 |
agtggttgattgctttggtgcaaaatcgcatactcactctctaacattaataaaaaagaatgaaccctaattgtttgtcaaaggaatttcagagatatca |
35101751 |
T |
|
| Q |
118 |
attcta--ctatatagtttttgctatattatatgtcaacaatataaatgtttaaaatagtgttgttttttgcttcaatctatatatcagtttgaaaataa |
215 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
35101752 |
attctatactatatattttttgctatattatatgtcaacaatataaatgtttaaaatagtgttgttttttgcttcaatctatatatcaatttcaaaataa |
35101851 |
T |
|
| Q |
216 |
atagtggtgttttttgttatatgcctataaaaaatagttgtgcaaggacattgaaattaccaacaattttgcttatttcattggaatgtattgtgctctc |
315 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
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|
| T |
35101852 |
atagtggtgttttttgttatctgcctatgaaaaatagttgtgcaaggacattgaaaataccaacaattttgcatatttcattggaatgtattgcgctctc |
35101951 |
T |
|
| Q |
316 |
aagttttttagtaaccgagtttctgtcatattgttttgctggtgataaaatgaatttgcattgtgcatctgcactacatgggtgttaatataaataaata |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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|
| T |
35101952 |
aagttttttagtaaccgagtttctgtcatattgttttgctggttataaaatgaatttgcattgtgcatctgcactgcatgggtgttaatttaaataaata |
35102051 |
T |
|
| Q |
416 |
ttgtagattttgttgcatgttaataagtgtaggttgtgtggttgtttctcgcttttgtgtgttgtctttaatctctataccttttagtg |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35102052 |
ttgtagattttgttgcatgttaataagtgtagggtgtgtggctgtttctcgcttttgtgtgctgtctttaatctctataccttttagtg |
35102140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 509 - 677
Target Start/End: Original strand, 35076112 - 35076280
Alignment:
| Q |
509 |
gttctgacctgtttgtgagtttgtcttcagtgttcnnnnnnnnnnnaattacggtaggtcttgcctaaaacagtgtgataaatatttaatgacggaattt |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35076112 |
gttctgacctgtttgtgagtttgtcttcagtgttctttttttttttaattacggtaggtcttgcctaaaacagtgtgataaatatttaatgacggaattt |
35076211 |
T |
|
| Q |
609 |
aaaaaactataataaatagatatctcaatttcaattccaattacgatttgcttgctgcttgttgttgat |
677 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35076212 |
aaaaaactataataaatagatatctcaatttcaattccaattacgatttgcttgctgcttgttgttgat |
35076280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 23095700 - 23095642
Alignment:
| Q |
163 |
tgtttaaaatagtgttgttttttgcttcaatctatatatcagtttgaaaataaatagtg |
221 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23095700 |
tgtttaaaatagtactgttttttgcttcaatctatatatcagtttgaaaataaatagtg |
23095642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 555 - 624
Target Start/End: Original strand, 35102270 - 35102340
Alignment:
| Q |
555 |
aattacggtaggtcttgcctaaaacagtgtgataaatatttaatgacggaatttaaaa-aactataataaa |
624 |
Q |
| |
|
||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35102270 |
aattatggtaggtcttgcctgagacagtgtgataaatatttaatgacggaatttaaaacaactataataaa |
35102340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 13763394 - 13763485
Alignment:
| Q |
132 |
tttttgctatattatatgtcaacaatataaatgtttaaaatagtgttgttttttgcttcaatctatatatcagtttgaaaataaatagtggt |
223 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| ||||||||| |||| ||||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
13763394 |
tttttgttgtattatatgtcaacaatataaatggttaaaatagcagtgttgtttgctttaatctatatataaaattgaaaataaatagtggt |
13763485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 23095642 - 23095587
Alignment:
| Q |
262 |
gacattgaaattaccaacaattttgcttatttcattggaatgtattgtgctctcaa |
317 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
23095642 |
gacattgaaaataccaacaattttgcatatttcattgaaatgtattgtgctctcaa |
23095587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 422
Target Start/End: Original strand, 37588885 - 37589296
Alignment:
| Q |
15 |
tcaagtggttgattgctttgatgcaaaatcgcatactcactctctaacattgataaaaaagaatgaaccctaattgtttgtcaaaggaatttcagagata |
114 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37588885 |
tcaagtggttgattgctttggtgcaaaatcgcatactcactctctaacattgataaaaaagaatgaaccctaattatttgtcaaaggaatttcagagata |
37588984 |
T |
|
| Q |
115 |
tcaattcta--ctatatagtttttgctatattatatgtcaacaatataaatgtttaaaatagtgttgttttttgcttcaatctatatatcagtttgaaaa |
212 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
37588985 |
tcaattctatactatatgttttttgctatattatatgtcaacaataaaaatgtttaaaatagtggtgttttttgcttcaatctatatattagtttgaaaa |
37589084 |
T |
|
| Q |
213 |
taaatagtggtgtttt--ttgttatatgcctataaaaaatagttgtgcaaggacattgaaattaccaacaattttgcttatttcattggaatgtattgtg |
310 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
37589085 |
taaatagtggtgttttttttgttatctgcctatgaaaaatagttgtgcaaggacattgaaaataccaacaattttgtatattttatttgaatgtattgtg |
37589184 |
T |
|
| Q |
311 |
ctctcaagttttttagtaaccgagtttctgtcatattgttttgctggtgataaaatgaatttgcattgtgcatctgcactacatgggtgttaatataaat |
410 |
Q |
| |
|
| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| |
|
|
| T |
37589185 |
ccctcaagttttttagtaaccaagtttctatcatattgttttgctggtgataaaatgaatttgcactgtgcatctgcactgcatgggtgttaagttaaat |
37589284 |
T |
|
| Q |
411 |
aaatattgtaga |
422 |
Q |
| |
|
|||||||||||| |
|
|
| T |
37589285 |
aaatattgtaga |
37589296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 596
Target Start/End: Complemental strand, 18288951 - 18288910
Alignment:
| Q |
555 |
aattacggtaggtcttgcctaaaacagtgtgataaatattta |
596 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
18288951 |
aattacggtaggtcttgcctaccatagtgtgataaatattta |
18288910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 3e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 227 - 422
Target Start/End: Complemental strand, 16679334 - 16679139
Alignment:
| Q |
227 |
ttttgttatatgcctataaaaaatagttgtgcaaggacattgaaattaccaacaattttgcttatttcattggaatgtattgtgctctcaagttttttag |
326 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
16679334 |
ttttgttatctgcctatgaataatagttgtgcaaggacattgaaaataccaacaattttgcatatttcattggaatgtactgtgctctcaagtattttag |
16679235 |
T |
|
| Q |
327 |
taaccgagtttctgtcatattgttttgctggtgataaaatgaatttgcattgtgcatctgcactacatgggtgttaatataaataaatattgtaga |
422 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||||||||||||||||||| ||||||| |||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
16679234 |
taactgagtttctgtcatactattttgctggtgataaaatgaatttgcagtgtgcatttgcactgcatgggtgttaagttaaataaatagtgtaga |
16679139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 341 - 454
Target Start/End: Complemental strand, 49696796 - 49696675
Alignment:
| Q |
341 |
tcatattgttttgctggtgataaaatgaatttgcattgtgcatctgcactacatgggtgttaa----ta---taaataaatattgtagattttgttgcat |
433 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| |||||||||||||| |||||||||||| || |||||||||| |||| |||||||||||| |
|
|
| T |
49696796 |
tcatattgttttgctgatgataaaatgagtttgcactgtgcatctgcactgcatgggtgttaactgttaagttaaataaataatgtatattttgttgcat |
49696697 |
T |
|
| Q |
434 |
gt-taataagtgtaggttgtgt |
454 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
49696696 |
gtcaaataagtgtaggttgtgt |
49696675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 441597 - 441655
Alignment:
| Q |
262 |
gacattgaaattaccaacaattttgcttatttcattggaatgtattgtgctctcaagtt |
320 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
441597 |
gacattgaaaataccaacaattttgcatatttcattggaatgtattgtgctctcaagtt |
441655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 441556 - 441597
Alignment:
| Q |
180 |
ttttttgcttcaatctatatatcagtttgaaaataaatagtg |
221 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
441556 |
ttttttgcttcaatctatatatcattatgaaaataaatagtg |
441597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0521 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0521
Description:
Target: scaffold0521; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 596
Target Start/End: Complemental strand, 2811 - 2770
Alignment:
| Q |
555 |
aattacggtaggtcttgcctaaaacagtgtgataaatattta |
596 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
2811 |
aattacggtaggtcttgcctaccatagtgtgataaatattta |
2770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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