View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5781_high_10 (Length: 521)
Name: NF5781_high_10
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 203 - 502
Target Start/End: Complemental strand, 38865308 - 38865005
Alignment:
| Q |
203 |
gttttcatacactttcaatgtttttacgatcattaataaattggtgaatggagattggaaatagtggaaagagttggtctatcaaaacatagttaactgt |
302 |
Q |
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| T |
38865308 |
gttttcatacattttcaatgtttttacgatcattaataaattggtgaatggagattggaaatagtggaaagagttggtctatcaaaacatagttaactgt |
38865209 |
T |
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| Q |
303 |
aattttgaaacttgactagcaaatgtgaacaaacaataaactgactagttcaatcttcattgataaatatttgtacaggaaataaagcaaaaatgtcata |
402 |
Q |
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| T |
38865208 |
aattttgaaacttgcctagcaaatgtgaacaaacaataaactgactagttcaatcttcattgataaatatttgtacaggaaataaagcaaaaatgtcata |
38865109 |
T |
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| Q |
403 |
agaatgtgattccttaaattatactaatgtatttaccagattgcatt----nnnnnnngtatatattattagccacaagatgcaacccaaccatatccaa |
498 |
Q |
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| T |
38865108 |
agaatgtgatttcttaaattatactaatgtatttaccagattgcattaaaaaaaaaaagtagatattattagccacaagatgcaacccaaccatatccaa |
38865009 |
T |
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| Q |
499 |
ctgc |
502 |
Q |
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|||| |
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| T |
38865008 |
ctgc |
38865005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 38865418 - 38865353
Alignment:
| Q |
108 |
ggataatgagcataagattctcttcca------agtgtaaggttcaaataagacaattagatgaac |
167 |
Q |
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| T |
38865418 |
ggataatgagcataagattctcttccagttccaagtgtaaggttcaaataagacaattagatgaac |
38865353 |
T |
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