View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5781_high_12 (Length: 512)
Name: NF5781_high_12
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781_high_12 |
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| [»] scaffold0012 (4 HSPs) |
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Alignment Details
Target: scaffold0012 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 78 - 498
Target Start/End: Original strand, 152789 - 153209
Alignment:
| Q |
78 |
ttgagagatttcttcctgcattttgtttcagttttgtggtaatctccttttctatggagttatttctctattttcataaataaaaataagtattatttct |
177 |
Q |
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| T |
152789 |
ttgagagatttcttcctgcattttgtttcagttttgtggtaatctccttttctatggagatatttctctattttcataaataaaaataagtattatttct |
152888 |
T |
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| Q |
178 |
ttttctatgattaattctattctgtcacgtcaacaagaacaaggttttgtgctttggaggttgttgatttgttctcatttagattttcatagttgtacca |
277 |
Q |
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| T |
152889 |
ttttctatgattaattctattctgtcacgtcgacaagaacaaggttttgagctttggagggtgttgatttgttctcatttagattttcatagttgtacca |
152988 |
T |
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| Q |
278 |
ttgcgaattcgtagtttatattgtagattttcgatttcacgttatttcacgtcaatgaatttacaataaccatacaatgatctcctatcagtcatactac |
377 |
Q |
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| T |
152989 |
ttgcgaattcgtagtttatattgtagattttcgatttcagataatttcacgtcaatgaatttacaataaccatacaatgatctcctatcagtcatactac |
153088 |
T |
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| Q |
378 |
gtgtcaatctcttttagtatcgacttctagataaaccttcttcgatatatcaaaatccgtaaacaactaaggtgttgcagtctttgatatcgttctctat |
477 |
Q |
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| T |
153089 |
gtgtcaatctcttttagtatcgacttctagataaaccctcttcgatatatcaaaatccataaacaactaaggtgttgcagtctttgatatctttctctat |
153188 |
T |
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| Q |
478 |
ctatcacttgatttgcctttg |
498 |
Q |
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| T |
153189 |
ctatcacttgatttgcctttg |
153209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 158647 - 158704
Alignment:
| Q |
63 |
ctcttgatatggaaattgagagatttcttcctgcattttgtttcagttttgtggtaat |
120 |
Q |
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| T |
158647 |
ctcttgatctggaaatcgagagtttttttcctgcattttgtttcagttttgtgctaat |
158704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 326
Target Start/End: Original strand, 160905 - 161004
Alignment:
| Q |
228 |
gctttggaggttgttgatttgttctcattt-agattttcatagttgtaccattgcgaattcgtagtttatattgtagattttcgatttcacgttatttca |
326 |
Q |
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| T |
160905 |
gctttggatgttgttgatttgttctcatagcatattttcatagctgtagcgttgggaactcgtagtttgtgttgtagattttcaatttcacatgatttca |
161004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 377
Target Start/End: Original strand, 161073 - 161123
Alignment:
| Q |
327 |
cgtcaatgaatttacaataaccatacaatgatctcctatcagtcatactac |
377 |
Q |
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| T |
161073 |
cgtcaatgaatttacgatgaccatgcattgatctcctatcagtcatactac |
161123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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