View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5781_high_17 (Length: 417)
Name: NF5781_high_17
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 413
Target Start/End: Complemental strand, 47176915 - 47176531
Alignment:
| Q |
16 |
caagaacatgaatgggtctgtg----atcaatgatgatgcctttctcatcattgaaagagtggctgtcacgtggggtagggaaagtcaatgctcatttac |
111 |
Q |
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| T |
47176915 |
caagaacatgaatgggtctgtgtgtgatgaatgatgatgcctttctcatcattgaaagagtggctgtgacgtggggtagggaaagtcaatgctcatttac |
47176816 |
T |
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| Q |
112 |
tcatagtactattattattcatgaatgaaggtgagtgagtgagttcacctcacttcaacaccatgannnnnnnnnnnnnnnnnngagtaaacta-----t |
206 |
Q |
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| T |
47176815 |
tcatagtactattattattcatgaatgaaggtgagtgagtgagttcacctcacttcaacaccatga---------tttttttttgagtaaactactattt |
47176725 |
T |
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| Q |
207 |
taggtcctaaaattgtaagtgtccgacaatttgagattccaaatttactaaatatcaaa-tgttccataaagttgtctaacattagtcgaaatgcttcct |
305 |
Q |
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| T |
47176724 |
taggtcctaaaattgtaagtgtccgacaatttgagattccaaatttacgaaatatcaaactgttccacaaagttgtctaacattagtcaaaatgcttcct |
47176625 |
T |
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| Q |
306 |
ctgtcaagtaatcttattagaggtgctgaatgctgatgttaaattactgtgtcttgtccacgttgatgtcaagtcacacagaaccttaaacgctcgtttc |
405 |
Q |
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| T |
47176624 |
ctgtcaagtaatctt--------------atgctaatgttaaattaccgtgtcttgtccacgttgatgtcaagtcacacagaaccttaaacgctcgtttc |
47176539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 41 - 141
Target Start/End: Complemental strand, 47168784 - 47168684
Alignment:
| Q |
41 |
aatgatgatgcctttctcatcattgaaagagtggctgtcacgtggggtagggaaagtcaatgctcatttactcatagtactattattattcatgaatgaa |
140 |
Q |
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| T |
47168784 |
aatgatggtgcatttctcatcattgaaggagtggctgtgacgtggggtagggaaagtcaatgctcatgttctcatagtactattatcattcatgagtgaa |
47168685 |
T |
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| Q |
141 |
g |
141 |
Q |
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| T |
47168684 |
g |
47168684 |
T |
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