View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5781_high_3 (Length: 612)
Name: NF5781_high_3
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 100 - 596
Target Start/End: Complemental strand, 183432 - 182923
Alignment:
| Q |
100 |
gactatgtgaaatgtggaccctgnnnnnnntaaaa--gagtgcagtatagaaaagggacactatggtgtctgaatggtggagataatccattccaaatac |
197 |
Q |
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| T |
183432 |
gactatgtgaaatgtggaccctgaaaaaaataaaaaagagtgcagtatagaaaagggacactatggtgtttgaatggtggagataatccattccaaatac |
183333 |
T |
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| Q |
198 |
agaaaatttaggattctccaaaatgaaaatccctatttcaactcattatgtaggatcttgtcacacaacaggacatcatcaat-----------gagaga |
286 |
Q |
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| T |
183332 |
agaaaatttaggattctccaaaatgaaaatccctatttcaactcattatgtaggatcttgtcacacaacaggacatcatcaattcatcatcaatgagaga |
183233 |
T |
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| Q |
287 |
ataagtgttgtcaaccatacccaactactctatagtcttcaccattaatacacaaccctcataattttcttagagaattaagtactacttgacaaaacat |
386 |
Q |
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| T |
183232 |
ataagtgttgtcaaccatacccaactactctatagtcttcaccattaatacacaaccctcataattttcttagagaattaagtactacttgacaaaacat |
183133 |
T |
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| Q |
387 |
aaatccaaattagtctctataatacaatgatttatggactaatttatcccgaatatgaaaatgtcatagattaatttgtgttttatttattgttagagac |
486 |
Q |
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| T |
183132 |
aaatccaaattagtctctataatacaatgatttatggactaatttatcccgaatatgaaaatgtcatagattaatttgtgttttatttattgttagagac |
183033 |
T |
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| Q |
487 |
tgaattaaattgtatcttcactcattaatcaaatagatagtttgttaggattgcatacttttatatgaactgattggctataaaatcaattaaatgatgg |
586 |
Q |
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| T |
183032 |
tgaattaaattgtatcttcactcattaatcaaatagatagtttgttaggattgcatacttttatatgaactgattggctataaaatcaattaaataatgg |
182933 |
T |
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| Q |
587 |
tccattatat |
596 |
Q |
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| T |
182932 |
cccattatat |
182923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 107
Target Start/End: Complemental strand, 183482 - 183453
Alignment:
| Q |
78 |
aaatatttagacgaggaaaaaggactatgt |
107 |
Q |
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| T |
183482 |
aaatatttagacgaggaaaaaggactatgt |
183453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 435
Target Start/End: Original strand, 15962607 - 15962650
Alignment:
| Q |
392 |
caaattagtctctataatacaatgatttatggactaatttatcc |
435 |
Q |
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| T |
15962607 |
caaattagtctctctaatacaatgagttaaggactaatttatcc |
15962650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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