View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5781_high_30 (Length: 250)
Name: NF5781_high_30
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781_high_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 37865101 - 37865337
Alignment:
| Q |
1 |
attctactaaagattctaactaacttattttcttcttagttccattcaacttccctctcaagccatgcttcgttgacatagccattatcagttcatgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37865101 |
attctactaaagattctaactaacttattttcttcttagttccattcaacttccctctcaagccatgcttcgttgacatagccattatcagttcatgcaa |
37865200 |
T |
|
| Q |
101 |
ggttggccgcaacactgtgctatgaatcattaatgaaactgatattaactttcttaaacttggtaaaacctctcaaatttacaatattcagctctaaaac |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37865201 |
ggttggctgcaacactgtgctatgaatcattaatgatactgatattaactttcttaaacttggtaaaacctctcaaatttacaatcttcagctctaaaac |
37865300 |
T |
|
| Q |
201 |
tatttcttgcaatcgaattgataatatctcataccct |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37865301 |
tatttcttgcaatcgaattgataatatctcataccct |
37865337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University