View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5781_high_36 (Length: 204)
Name: NF5781_high_36
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 5e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 32031938 - 32031750
Alignment:
| Q |
1 |
gtagtaatgaaattcacttgctttgcatactcctcctaaaggcttagcattacatttattactccaaccaaatattccattctccaatggacaaccaaca |
100 |
Q |
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| T |
32031938 |
gtagtaatgaaattcacttgctttgcatactcctcctaaaggcttagcattacatttattactccaaccaaatattccattctccaatggacaaccaaca |
32031839 |
T |
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| Q |
101 |
cattgattatcctcacaaagcccaaatttcccacatctctcaggcaatt-ggcactcaccctcatcttcatcttcatcaaagagagtgt |
188 |
Q |
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| T |
32031838 |
cattgattatcctcacaaagcccaaatttcccacatctctcaggcaattgggcactcaccctcatcttcatcttcatcaaagagagtgt |
32031750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 32065078 - 32064886
Alignment:
| Q |
1 |
gtagtaatgaaattcacttgctttgcatactcctcctaaaggcttagcattacatttattactccaaccaaatattccattctccaatggacaaccaaca |
100 |
Q |
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| T |
32065078 |
gtagtaatgaaattcacttgctttgcatactcctcctaaaggcttagggctacacttattactccaaccaaatattccattctccaatggacaaccaaaa |
32064979 |
T |
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| Q |
101 |
cattgattatcctcacaaagcccaaatttcccacatctctcaggcaattggcactcaccctc------atcttcatcttcatcaaagagagtg |
187 |
Q |
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| T |
32064978 |
cattgattatcctcacaaagcccaaattccccacatctctctggcaattgacactcactctcatctagatcttcatcttcatcaaagagagtg |
32064886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 32072401 - 32072217
Alignment:
| Q |
1 |
gtagtaatgaaattcacttgctttgcatactcctcctaaaggcttagcattacatttattactccaaccaaatattccattctccaatggacaaccaaca |
100 |
Q |
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|||||||||||| |||||||||||||||||| || | |||||||||| |||| ||||| ||| ||| || |||||||||||||| |||||||||||| |
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| T |
32072401 |
gtagtaatgaaactcacttgctttgcatactactac---aggcttagcactacaattattgctcgaacttaagattccattctccaaaggacaaccaaca |
32072305 |
T |
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| Q |
101 |
cattgattatcctcacaaagcccaaatttcccacatctctcaggcaattggcactcaccctcatcttcatcttcatcaaagagagtgt |
188 |
Q |
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| T |
32072304 |
cattgattatcctcacaaagcccaaattttccacatctctttggcaattgacattcactctcatcaaaatctctatcaaagagagtgt |
32072217 |
T |
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