View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5781_high_4 (Length: 587)
Name: NF5781_high_4
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 73 - 577
Target Start/End: Complemental strand, 51413860 - 51413356
Alignment:
| Q |
73 |
gtacagagattcaaagagagagcctcagaaacagatttgtcactggagtttgaatatgattcacctgccacatccacatgattactagctgggtcaaata |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
51413860 |
gtacagagattcaaagagagagcctcagaagcagatttgtcactggagtttgaatatgattcacctgccacatccacatgattactagctgggtcaaaca |
51413761 |
T |
|
| Q |
173 |
cacaggacacgtcagcattaatagtgatgttgatgttgatgttgatgatgatccaaccatttctgcaacctcaattctctgtaaaacttttctatgaact |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51413760 |
cacaggacacgtcagcattaatagtgatgttgatgttgatgttgatgatgatccaaccatttctgcaacctcaattctctgtaaaacttttctatgaact |
51413661 |
T |
|
| Q |
273 |
cttccgccgcctggtcaacatgaaactctttctccttttctgtctccctagacaaagttgtcatcttcacgcgcctcctttcattgccgcgacacacctt |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51413660 |
cttccgccgcctggtcaacatgaaactctttctccttttctgtctccctagacaaagttgtcatcttcacgcgcctcctttcattgccgcgacacacctt |
51413561 |
T |
|
| Q |
373 |
catttgccggcgaccatcctccttggccggagacaaaagcttcctcctactactgctggcgccaccgcgagagagacgaggtggactgctactacaactg |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
51413560 |
catttgccggcgaccatcctccttggccggagacaaaagcttcctcctactactgctggcgccaccgcgagagagacgaggtggactgctactacagctg |
51413461 |
T |
|
| Q |
473 |
aactgatactccaacggtgaaatgaaatacatatcagcatcacgtggtcggcacgtgagtgcttcatggtgcttcaccatcacgttgttcaatgctttcc |
572 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
51413460 |
aactgatactccaacggtgaaatgaaatacatatcagcatcacgtggtcggcacgtgagtgcttcatggtgcttcaccatcacgctgttcaatgctttcc |
51413361 |
T |
|
| Q |
573 |
ctatg |
577 |
Q |
| |
|
||||| |
|
|
| T |
51413360 |
ctatg |
51413356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 399 - 577
Target Start/End: Complemental strand, 51418584 - 51418409
Alignment:
| Q |
399 |
ccggagacaaaagcttcctcctactactgctggcgccaccgcgagagagacgaggtggactgctactacaactgaactgatactccaacggtgaaatgaa |
498 |
Q |
| |
|
||||||| || |||||||||||||||||| | || |||| |||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| || |
|
|
| T |
51418584 |
ccggagataatagcttcctcctactactgtttgcaccac---gagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaataaa |
51418488 |
T |
|
| Q |
499 |
atacatatcagcatcacgtggtcggcacgtgagtgcttcatggtgcttcaccatcacgttgttcaatgctttccctatg |
577 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
51418487 |
atacatatcagcatcacgtggacggcacgtgagtgcttcatggtgcttcaccatcacgttgttcagtgctttccctatg |
51418409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 51418763 - 51418698
Alignment:
| Q |
217 |
atgatgatccaaccatttctgcaacctcaattctctgtaaaacttttctatgaactcttccgccgc |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| || ||||| |
|
|
| T |
51418763 |
atgatgatccaaccatttctgcaacctcaactctctgtaaaacctctctatgaactcctctgccgc |
51418698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 398 - 507
Target Start/End: Complemental strand, 51416582 - 51416472
Alignment:
| Q |
398 |
gccggagacaaaagcttcctcctactactgctggcgccac-cgcgagagagacgaggtggactgctactacaactgaactgatactccaacggtgaaatg |
496 |
Q |
| |
|
|||||||| || ||||| |||||||| ||||| || ||| | |||| |||| | |||||| |||| ||||| ||||||||||| ||||||||||||| | |
|
|
| T |
51416582 |
gccggagataatagctttctcctactgctgcttgcaccatgcacgagtgagatgcggtggattgctgctacagctgaactgatattccaacggtgaaacg |
51416483 |
T |
|
| Q |
497 |
aaatacatatc |
507 |
Q |
| |
|
||||||||||| |
|
|
| T |
51416482 |
aaatacatatc |
51416472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 476 - 546
Target Start/End: Complemental strand, 29323760 - 29323690
Alignment:
| Q |
476 |
tgatactccaacggtgaaatgaaatacatatcagcatcacgtggtcggcacgtgagtgcttcatggtgctt |
546 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||||| |
|
|
| T |
29323760 |
tgatactccaacggtgaaacgaaatacatatcagcatcacgtggacggcacatgagtgcttcgtggtgctt |
29323690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University