View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5781_high_6 (Length: 559)
Name: NF5781_high_6
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Complemental strand, 33531987 - 33531449
Alignment:
| Q |
1 |
aagccctatacacaatccccgcctgcttcgaacacccaaacatcgtatgactcttaccagaaccagttggtccatacatcataatagtacatttatcccc |
100 |
Q |
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| T |
33531987 |
aagccctatacacaatccccgcctgcttcgaacacccaaacatcgtatgactcttaccagaaccagttggtccatacatcataatagtacatttatcccc |
33531888 |
T |
|
| Q |
101 |
caatttcacaccattaatccttgattccacaaatttcttgtagaacaagtccaattcttcttcctcagaaacagacaccccatcaagagtaaaatctcta |
200 |
Q |
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| T |
33531887 |
caatttcacaccattaatccttgattccacaaatttcttgtagaacaagtccaattcttcttcctcagaaacagacaccccatcaagagtaaaatctcta |
33531788 |
T |
|
| Q |
201 |
taaccaaaatcagccttcacccttatagatctagagttagaacttgcttgtaaaacagataaaggcttgtcttttcgatccgggtagtcacgaattctcg |
300 |
Q |
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| T |
33531787 |
taaccaaaatcagccttcacccttatagatctagaattagaacttgcttgtaaaacagataaaggcttgtcttttcgatccgggtagtcacgaattctcg |
33531688 |
T |
|
| Q |
301 |
caataacttcaattgggtgttcagggggagaatctttgttgttgaaatttggatggggtgatgggtgtggatgtggtggtgtaggtgctggtttgacgcc |
400 |
Q |
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| T |
33531687 |
caataacttcaattgggtgttcagggggagaatctttgttgttgaaatttggatggggtgatgggtgtggatgtggtggtgtaggtgctggtttgacgcc |
33531588 |
T |
|
| Q |
401 |
attgaaattaagacgatgctttgaacgtggagtgatcaaatgggttgtgtggatttgcttggaagaagaagaaggtgtgggtgccatgaatgtgaatttt |
500 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33531587 |
attgaaattaagacgatgctttgaacgtggagttatcaaatgggttgtgtggatttgcttggaagaagaagaaggtgtgggtgccatgaatgtgaatttt |
33531488 |
T |
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| Q |
501 |
gaagtaaaacccagaaatgaaatggaagaaagattgaat |
539 |
Q |
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| T |
33531487 |
gaagtaaaacccagaaatgaaatggaagaaagattgaat |
33531449 |
T |
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