View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5781_high_7 (Length: 538)

Name: NF5781_high_7
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5781_high_7
NF5781_high_7
[»] chr7 (1 HSPs)
chr7 (33-538)||(47621504-47622006)


Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 33 - 538
Target Start/End: Original strand, 47621504 - 47622006
Alignment:
Q  33 aggatttattgcagtaaagttattttgaggnnnnnnntatatatcannnnnnnatgaagaaaatttagagtgaggggtttgttctcccatcaaagaaatt 132  Q
    |||||||||| |||||||||||||||||||       |||||||||       ||||||||||||||| |||||||||||||||||||||||||||||||    
T  47621504 aggatttattacagtaaagttattttgaggaaaaaa-tatatatcatttttttatgaagaaaatttagcgtgaggggtttgttctcccatcaaagaaatt 47621602  T
Q  133 tatatttactcctctagagatagtatcatcannnnnnnnnnngacaacatgatactctgaagtaaaaacactccttaaattggacgtgtcctgacaccag 232  Q
    ||||||||||||||||| |||||||||||||           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  47621603 tatatttactcctctagggatagtatcatcatttttttgtt-gacaacatgataatgtgaagtaaaaacactccttaaattggacgtgtcctgacaccag 47621701  T
Q  233 acatgcatcggtaactaacattgacatatttaattacattgaattatctttatctatttcggtgtcggcatgtcagtgtattgcatgtccgtgttcgtgt 332  Q
    ||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||    
T  47621702 acatgtatcggtagctaacattgacatatttaattatattgaattatctttatctatttcggtgtcggcgtgtcagtgtgttgcatgttcgtgttcgtgt 47621801  T
Q  333 acgttcctgtgcttcatttgcatcatatcatcgtttgataatgtattactgtcattcttttattagatccttgatataatccgagtcaggtaaagaggat 432  Q
    |||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47621802 acgttcctgtacttcatttgcattatatcatcgtttgaaaatgtattactgtcattcttttattagatccttgatataatccgagtcaggtaaagaggat 47621901  T
Q  433 tgatataagggattaaaacttaaactgcacgnnnnnnnnnnattcattcacaaaattggaagatgatctatatcattaccatataatatgattgatatat 532  Q
    |||||||||||||||||||||| ||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47621902 tgatataagggattaaaacttacactgcacg-tttttttttattcattcacaaaattggaagatgatctatatcattaccatataatatgattgatatat 47622000  T
Q  533 gtcatc 538  Q
    ||||||    
T  47622001 gtcatc 47622006  T

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