View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5781_low_11 (Length: 516)
Name: NF5781_low_11
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 21 - 512
Target Start/End: Complemental strand, 11321701 - 11321210
Alignment:
| Q |
21 |
aaaataaacctgaacttcttctaccttctcttccaaacaacacactctttcaagaccgtcctataattaaaaacagtaaaatctatttctcctcaactca |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||| || |
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| T |
11321701 |
aaaataaacctgaacttcttctaccttctcttccaaacaacacactctttcaagactgtccaataattaaaaacagtaaaatctatttctcttcaacgca |
11321602 |
T |
|
| Q |
121 |
tgatcaaccaaacgtgcttttcaaaagcgcttctgctgtttactccaccgccgtcgatgacaccggaactttaactaggctgacacctcacggtgttgtt |
220 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11321601 |
cgatcaaccaaacgcgcttttcaaaagcgcttctgctgtttactccaccgccgtcgatggcaccggaactttaactaggctgacacctcacggtgttgtt |
11321502 |
T |
|
| Q |
221 |
gattatagtcctgctgtttctgtaaccggaaacttaatcgctgttgcttcctacggttctcgaaactgggatggcgattttcgtgaactcaaaacggata |
320 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11321501 |
gattatagtcctgctgtttctctaaccggaaacttaatcgctgttgcttcctacggttctcgaaactgggatggcgattttcgtgaactcaaaacggata |
11321402 |
T |
|
| Q |
321 |
tcgttgtgtttgaagagtctgtgccggagaatcgtgttgtggttgctgaacgcggtggctggccgacgtggttgggagattcaacggtgttcttccacag |
420 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11321401 |
tcgttgtgtttgaagagtctgtgccggagaatcgtgttgtggttgctgaacgcggtggctggccgacgtggttgggagattcaacggtgttcttccacag |
11321302 |
T |
|
| Q |
421 |
aatcgccgatgacggttggtggagcattttccgagccgatttaaaggattctaatcttaccggaattcaatcatcacctattcatatcactc |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
11321301 |
aatcgccgatgacggttggtggagcattttccgagccgatttaaaggattctaatcttaccggaattcaatcctcacctattcgtatcactc |
11321210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 21 - 512
Target Start/End: Complemental strand, 11479722 - 11479231
Alignment:
| Q |
21 |
aaaataaacctgaacttcttctaccttctcttccaaacaacacactctttcaagaccgtcctataattaaaaacagtaaaatctatttctcctcaactca |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||| || |
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| T |
11479722 |
aaaataaacctgaacttcttctaccttctcttccaaacaacacactctttcaagactgtccaataattaaaaacagtaaaatctatttctcttcaacgca |
11479623 |
T |
|
| Q |
121 |
tgatcaaccaaacgtgcttttcaaaagcgcttctgctgtttactccaccgccgtcgatgacaccggaactttaactaggctgacacctcacggtgttgtt |
220 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11479622 |
cgatcaaccaaacgcgcttttcaaaagcgcttctgctgtttactccaccgccgtcgatggcaccggaactttaactaggctgacacctcacggtgttgtt |
11479523 |
T |
|
| Q |
221 |
gattatagtcctgctgtttctgtaaccggaaacttaatcgctgttgcttcctacggttctcgaaactgggatggcgattttcgtgaactcaaaacggata |
320 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11479522 |
gattatagtcctgctgtttctctaaccggaaacttaatcgctgttgcttcctacggttctcgaaactgggatggcgattttcgtgaactcaaaacggata |
11479423 |
T |
|
| Q |
321 |
tcgttgtgtttgaagagtctgtgccggagaatcgtgttgtggttgctgaacgcggtggctggccgacgtggttgggagattcaacggtgttcttccacag |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11479422 |
tcgttgtgtttgaagagtctgtgccggagaatcgtgttgtggttgctgaacgcggtggctggccgacgtggttgggagattcaacggtgttcttccacag |
11479323 |
T |
|
| Q |
421 |
aatcgccgatgacggttggtggagcattttccgagccgatttaaaggattctaatcttaccggaattcaatcatcacctattcatatcactc |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
11479322 |
aatcgccgatgacggttggtggagcattttccgagccgatttaaaggattctaatcttaccggaattcaatcctcacctattcgtatcactc |
11479231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 188 - 447
Target Start/End: Complemental strand, 11460137 - 11459878
Alignment:
| Q |
188 |
actttaactaggctgacacctcacggtgttgttgattatagtcctgctgtttctgtaaccggaaacttaatcgctgttgcttcctacggttctcgaaact |
287 |
Q |
| |
|
||||| |||||||| |||||| |||||||||||||||||||||| || |||||| | ||||||| |||||||| |||||||||||||| |||| | |
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| T |
11460137 |
actttcactaggcttacaccttacggtgttgttgattatagtccagccgtttctctcaccggaagtttaatcgcggttgcttcctacggaactcgtcgat |
11460038 |
T |
|
| Q |
288 |
gggatggcgattttcgtgaactcaaaacggatatcgttgtgtttgaagagtctgtgccggagaatcgtgttgtggttgctgaacgcggtggctggccgac |
387 |
Q |
| |
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|| | ||||| || | || || ||||||| || || |||||||| || ||||| |||||||| ||||||||||| ||||||||||| |||||||| |
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| T |
11460037 |
ggaacggcgaaattagagagcttgaaacggagatagtagtgtttgaggaatctgtcccggagaaccgtgttgtggtgagcgaacgcggtggttggccgac |
11459938 |
T |
|
| Q |
388 |
gtggttgggagattcaacggtgttcttccacagaatcgccgatgacggttggtggagcat |
447 |
Q |
| |
|
||||||||| |||||||| |||||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
11459937 |
gtggttgggtgattcaacattgttcttccacaaaatcgccgaagacggttggtggagcat |
11459878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 348 - 503
Target Start/End: Complemental strand, 30441900 - 30441745
Alignment:
| Q |
348 |
agaatcgtgttgtggttgctgaacgcggtggctggccgacgtggttgggagattcaacggtgttcttccacagaatcgccgatgacggttggtggagcat |
447 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
30441900 |
agaatcgtgttgtggttgctgaatgcggtggctggccgacgtggttaggcaattcaacggtgttctttcacagaatcgccgatgatggttggtggagcat |
30441801 |
T |
|
| Q |
448 |
tttccgagccgatttaaaggattctaatcttaccggaattcaatcatcacctattc |
503 |
Q |
| |
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|||||||| ||||||| ||||||| |||||||||||||||||||| ||||| |||| |
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| T |
30441800 |
tttccgagtcgatttacaggattcgaatcttaccggaattcaatcctcaccaattc |
30441745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 430 - 498
Target Start/End: Original strand, 13040504 - 13040572
Alignment:
| Q |
430 |
tgacggttggtggagcattttccgagccgatttaaaggattctaatcttaccggaattcaatcatcacc |
498 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| ||||| |
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|
| T |
13040504 |
tgacggttggtggagcattttccgagttgatttacaggattcgaatcttaccggaattcaatcgtcacc |
13040572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 430 - 497
Target Start/End: Original strand, 13057926 - 13057993
Alignment:
| Q |
430 |
tgacggttggtggagcattttccgagccgatttaaaggattctaatcttaccggaattcaatcatcac |
497 |
Q |
| |
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|||||||||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||| |||| |
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| T |
13057926 |
tgacggttggtggagcattttctgagttgatttacaggattcgaatcttaccggaattcaatcctcac |
13057993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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