View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5781_low_13 (Length: 510)
Name: NF5781_low_13
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781_low_13 |
 | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 426; Significance: 0; HSPs: 33)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 4621920 - 4622403
Alignment:
| Q |
1 |
aatgtgtagatcataactgttatcagtatatatgtaaatgaatttcatacaattatatgtatcgttatttctattgaactaaaatgacataataagttac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4621920 |
aatgtgtagatcataactgttatcagtatatatgtaaatgaatttcatacaattatatgtatcattatttctattgaactaaaatgacataataagttac |
4622019 |
T |
|
| Q |
101 |
atttatatggcttacattttaaatataactagcacctcacactatgcatcattannnnnnngacaataaaataaattcaagagaagatgacacaaccaca |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4622020 |
atttatatggcttagattttaaatataactagcacctcacactatgcatcattatttttttgacaataaaataaattcaagagaagatgacacaaccaca |
4622119 |
T |
|
| Q |
201 |
tttcctgggataaatcactttaattttagtattgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgt |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4622120 |
tttcctggc------cactttaattttagtattgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgt |
4622213 |
T |
|
| Q |
301 |
ctcatctgccttctccttcaactccatggccttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctctt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4622214 |
ctcatctgccttctccttcaactccatggccttttgtctcatcttctttcctttatctcccgacatcaattcattgatcagattcgacacctcctctctt |
4622313 |
T |
|
| Q |
401 |
ttcacattagtatcgatttcgattccaatctcccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4622314 |
ttcacattagtattgatttcgattccaatctcccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
4622403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 34 - 490
Target Start/End: Complemental strand, 4256936 - 4256482
Alignment:
| Q |
34 |
gtaaatgaatttcatacaattatatgtatcgttatttctattgaactaaaatgacataataagttacatttatatggcttacattttaaatataactagc |
133 |
Q |
| |
|
|||| ||||||||||||||||||||| | | |||||| |||||||| ||||| ||||||||||| | | | | ||||||| |||| ||||||||| ||| |
|
|
| T |
4256936 |
gtaactgaatttcatacaattatatgaaacattatttatattgaaccaaaatcacataataagtcatactaa-atggctttaattt-aaatataacaagc |
4256839 |
T |
|
| Q |
134 |
acctcacacta--tgcatcattannnnnnngacaataaaataaattcaagagaagatgacacaaccacatttcctgggataaatcactttaattttagta |
231 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||||||||||| |||| ||||||||||||||| | | |||||| ||| |||| | |||| |
|
|
| T |
4256838 |
acctcacactaaatgcatcat--attttttgacaataaaacaaattcaagaggagattacacaaccacatttcatagaataaattactataatct-agta |
4256742 |
T |
|
| Q |
232 |
ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||| |||| | |||||||| ||| |||| ||||| |||||| |||||| || |
|
|
| T |
4256741 |
ttgtttaagcatgacctccttaataactttgtccaagttcatcaatgaatgaccagctgggctggtgttcttctctgtcttcttcttcaattccatgacc |
4256642 |
T |
|
| Q |
332 |
ttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatct |
431 |
Q |
| |
|
||||| ||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| ||||| ||||||||||||| |||||| |||||||||| |
|
|
| T |
4256641 |
ttttgcctcatcttctttcctttttctcccgacatcaattcattgatcagattctccacctcatctctcttcacattagtattgatttcaattccaatct |
4256542 |
T |
|
| Q |
432 |
cccatgaattgcagatatatctacagtttgttgg-ctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
||||| | || ||| |||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
4256541 |
cccattcgctacaaataaatctacagtttgttggtctgatcagcaaaaaatggccaacac |
4256482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 34 - 490
Target Start/End: Complemental strand, 4267491 - 4267037
Alignment:
| Q |
34 |
gtaaatgaatttcatacaattatatgtatcgttatttctattgaactaaaatgacataataagttacatttatatggcttacattttaaatataactagc |
133 |
Q |
| |
|
|||| ||||||||||||||||||||| | | |||||| |||||||| ||||| ||||||||| | | | | | ||||||| |||||||||||||| ||| |
|
|
| T |
4267491 |
gtaactgaatttcatacaattatatgaaacattatttatattgaaccaaaatcacataataaatcatactaa-atggcttttattttaaatataacaagc |
4267393 |
T |
|
| Q |
134 |
acctcacacta--tgcatcattannnnnnngacaataaaataaattcaagagaagatgacacaaccacatttcctgggataaatcactttaattttagta |
231 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||||||||||| |||| ||||||| ||| ||||| | |||||| |||| ||| | |||| |
|
|
| T |
4267392 |
acctcacactaaatgcatcat--attttttgacaataaaacaaattcaagaggagattacacaactacaattcctagaataaatgacttcaatct-agta |
4267296 |
T |
|
| Q |
232 |
ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| || || |||| ||||||||| ||||||||||| | | |
|
|
| T |
4267295 |
ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttcctcttcaactccaagaca |
4267196 |
T |
|
| Q |
332 |
ttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatct |
431 |
Q |
| |
|
||||| ||||| | |||||||| ||||||| |||||||||||||| | ||| || || ||||| |||||||| |||| |||||||| |||||||| |
|
|
| T |
4267195 |
ttttgcttcatcatatttcctttctctcccaccatcaattcattgactaacttctcgacgtcatctctcttcacatttgtattgatttcgagtccaatct |
4267096 |
T |
|
| Q |
432 |
cccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
||||| || ||| ||| ||||||||||||||||||||||| | || |||||||||||| |
|
|
| T |
4267095 |
cccattcatagcaaataaatctacagtttgttggctgatcaccaaagaatggccaacac |
4267037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 235 - 490
Target Start/End: Original strand, 4570978 - 4571233
Alignment:
| Q |
235 |
tttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggccttt |
334 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||| || || ||| || ||||||| ||||| |||||| ||| |
|
|
| T |
4570978 |
tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcttcttcatctccattatattt |
4571077 |
T |
|
| Q |
335 |
tgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatctccc |
434 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||| || |||| |||||| | ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4571078 |
ttcctcatcttctttcctttatctcccaccatcaattcattgaccaaattctccacctcatttctcttcacattagtatcgatttcgattccaatctccc |
4571177 |
T |
|
| Q |
435 |
atgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||| ||||||||| ||||| |
|
|
| T |
4571178 |
atgtattgcagatatatctacagtttgctggctgatcagcaaaaaatggctaacac |
4571233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 227 - 490
Target Start/End: Complemental strand, 4260288 - 4260025
Alignment:
| Q |
227 |
tagtattgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactcca |
326 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||| | ||||| ||||| || ||||| |||| ||||||||| ||||||||||| |
|
|
| T |
4260288 |
tagtattgtttgagcatgacctgcttaataactttgtccaagttcatcaatgaataaccagatggactggtgttctcctctgccttcctcttcaactcca |
4260189 |
T |
|
| Q |
327 |
tggccttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattcc |
426 |
Q |
| |
|
|| ||||||| |||||||||||||||| ||||| |||| | |||||||||||| |||| |||||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
4260188 |
tgaccttttgcctcatcttctttccttcttctcctgacataatttcattgatcagcttcgccacctcatctcttttcacattagtattaatttcaattcc |
4260089 |
T |
|
| Q |
427 |
aatctcccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
|||||||||| || || ||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4260088 |
aatctcccattcgttacaaataaatctacagtttgttggctgatcagcaaaaaatggccaacac |
4260025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 232 - 490
Target Start/End: Original strand, 4601792 - 4602050
Alignment:
| Q |
232 |
ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc |
331 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||| | || || |||| | |||| ||| |||||||||||||||| |
|
|
| T |
4601792 |
ttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcctttgccatcttcttcaactccatggcc |
4601891 |
T |
|
| Q |
332 |
ttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatct |
431 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||| |||||||||||| |||| || ||||||||| |||||||| ||||||||||| || ||||||| |
|
|
| T |
4601892 |
ttttgcctcatcttcttgcctttatctccggctatcacttcattgatcagcttcgccaactcctctctcttcacatttgtatcgatttccataccaatct |
4601991 |
T |
|
| Q |
432 |
cccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
||||| ||| || ||| |||||||||||||||||||||| || ||||| ||||||||| |
|
|
| T |
4601992 |
cccattcattacaaataaatctacagtttgttggctgatcggcaaaaaaaggccaacac |
4602050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 232 - 490
Target Start/End: Original strand, 4516324 - 4516582
Alignment:
| Q |
232 |
ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc |
331 |
Q |
| |
|
|||||| |||| ||||||||||| ||||| |||||||| |||||||||||||| || || || ||| |||||||||| |||||| ||||||||| |
|
|
| T |
4516324 |
ttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttcttcttcaattccatggcc |
4516423 |
T |
|
| Q |
332 |
ttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatct |
431 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| |||||||||||||| ||| |||||||||||| |||||||| ||||| ||||| |||||||| |
|
|
| T |
4516424 |
ttttgcctcatcttctttcctttatctcccaccattaattcattgatcagcttctccacctcctctctcttcacattggtatcaatttctgctccaatct |
4516523 |
T |
|
| Q |
432 |
cccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
||||| |||||| |||||||| || ||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
4516524 |
cccattcattgcaaatatatctgcaatttgttggctgctcagcaaaaaaaggccaacac |
4516582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 232 - 490
Target Start/End: Original strand, 4617025 - 4617283
Alignment:
| Q |
232 |
ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc |
331 |
Q |
| |
|
||||||||||| || |||||||||||||||| |||||| |||||||||||||||| || || || |||| |||||||||| |||||||||||||||| |
|
|
| T |
4617025 |
ttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatggcc |
4617124 |
T |
|
| Q |
332 |
ttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatct |
431 |
Q |
| |
|
||||| |||| ||||||||||||||||| |||| |||||||||||| || | || ||||||||| |||||||| ||||||||||| || ||||||| |
|
|
| T |
4617125 |
ttttgcttcattttctttcctttatctccggctatcacttcattgatcagctttgccaactcctctctcttcacattcgtatcgatttccataccaatct |
4617224 |
T |
|
| Q |
432 |
cccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
||||| ||| || ||| ||||||||| ||||||||| || || ||||||||||||||| |
|
|
| T |
4617225 |
cccattcattacaaataaatctacagtctgttggctggtcggcaaaaaatggccaacac |
4617283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 232 - 490
Target Start/End: Original strand, 4480696 - 4480954
Alignment:
| Q |
232 |
ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc |
331 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||| || || ||| |||||| ||| |||||||||||||||| |
|
|
| T |
4480696 |
ttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttcaactccatggcc |
4480795 |
T |
|
| Q |
332 |
ttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatct |
431 |
Q |
| |
|
||||| |||||||||||||||| ||||||| || |||||||||||| | || ||| || ||||| |||||||| ||||||||||||| |||||||| |
|
|
| T |
4480796 |
ttttgcttcatcttctttcctttctctcccaccaacaattcattgattaacctctccacatcttctctcttcacattggtatcgatttcgagtccaatct |
4480895 |
T |
|
| Q |
432 |
cccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
||||| |||||| ||| ||||| ||| | ||||||||| || || |||||||||||| |
|
|
| T |
4480896 |
cccattcattgcaaataattctacggttaggtggctgatcggcaaagaatggccaacac |
4480954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 230 - 490
Target Start/End: Original strand, 4625952 - 4626212
Alignment:
| Q |
230 |
tattgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatgg |
329 |
Q |
| |
|
||||||||||||| ||| || ||||| | ||| |||| || |||||||||||||||| || || | |||| |||||||||| |||||||||||||| |
|
|
| T |
4625952 |
tattgtttaagcaagacatcattaatcagtttatccatattcatgtatgaacaaccaccgggactaatgttctcctctgccttcttcttcaactccatgg |
4626051 |
T |
|
| Q |
330 |
ccttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaat |
429 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||| |||||||||| ||| ||| |||| || |||||||||| ||||||||| |||||||| |
|
|
| T |
4626052 |
ccttttgcctcatcttctttccgttatctcctgccatcaatgcattgatcagtttctctaccccctccctcttcacattagcatcgatttccattccaat |
4626151 |
T |
|
| Q |
430 |
ctcccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||||||||||||||| ||| |||||||||| |
|
|
| T |
4626152 |
ctcccattcattgcaaatatatctacaatttgttggctgatcagcaaaatttggccaacac |
4626212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 232 - 489
Target Start/End: Original strand, 4574311 - 4574568
Alignment:
| Q |
232 |
ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc |
331 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||| ||||||||||||| ||||| || || | | || |||||| ||||| ||| ||||| |
|
|
| T |
4574311 |
ttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttcttcagctcaatggct |
4574410 |
T |
|
| Q |
332 |
ttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatct |
431 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||| || || ||||||||||||||||| ||||||||| |
|
|
| T |
4574411 |
ttttgcctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatct |
4574510 |
T |
|
| Q |
432 |
cccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaaca |
489 |
Q |
| |
|
||||| |||||| |||||||| ||||||| ||||||||| | |||||||||||||| |
|
|
| T |
4574511 |
cccattcattgcaaatatatctgcagtttgctggctgatccgaaaaaaatggccaaca |
4574568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 232 - 490
Target Start/End: Original strand, 4560509 - 4560767
Alignment:
| Q |
232 |
ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc |
331 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||| ||||||||||||| ||||| || || | | || ||||| | ||||| |||||||||| |
|
|
| T |
4560509 |
ttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctttttcttcagctccatggcc |
4560608 |
T |
|
| Q |
332 |
ttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatct |
431 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||| ||| ||| ||| ||||| || || ||||| ||||| |||||| ||||||||| |
|
|
| T |
4560609 |
ttttgcctcatcttctttcctttatctcaggacatcaattcattgaccagtttctccacgtcctccctctttacatttgtatcaatttcgtttccaatct |
4560708 |
T |
|
| Q |
432 |
cccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
|||| |||||| |||||||| ||||||| ||||||||| || ||||||||||||||| |
|
|
| T |
4560709 |
tccattcattgcaaatatatcttcagtttgctggctgatctgcaaaaaatggccaacac |
4560767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 235 - 490
Target Start/End: Original strand, 4585642 - 4585897
Alignment:
| Q |
235 |
tttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggccttt |
334 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||| ||||||||||||| ||||| || || ||| || ||||||| ||||||||| || |||||| |
|
|
| T |
4585642 |
tttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtcctcctccgccttcttcttcaactcgattgccttt |
4585741 |
T |
|
| Q |
335 |
tgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatctccc |
434 |
Q |
| |
|
|| |||||||||||||| || ||||||| |||||||||||||| || ||| |||||||||||| |||||||| || || | ||| || |||||||||| |
|
|
| T |
4585742 |
tgcctcatcttctttccattctctcccaccatcaattcattgaccaacttctccacctcctctctcttcacattggtgtcaacttccatcccaatctccc |
4585841 |
T |
|
| Q |
435 |
atgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
|| |||||| ||| |||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
4585842 |
attcattgcaaataattctacagtttgttggctgatcagcaatgaatggccaacac |
4585897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 235 - 490
Target Start/End: Original strand, 4592237 - 4592492
Alignment:
| Q |
235 |
tttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggccttt |
334 |
Q |
| |
|
|||||||| |||||||| || | |||||||||||| | ||||||||||| ||||| || || |||| |||||||||| ||||||||| || |||||| |
|
|
| T |
4592237 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttcttcaactcgattgccttt |
4592336 |
T |
|
| Q |
335 |
tgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatctccc |
434 |
Q |
| |
|
| ||||||||||||||||| ||||||| ||||||||||||||| || ||| |||||||||||| || ||||| ||||| ||||| || |||||||||| |
|
|
| T |
4592337 |
ttcctcatcttctttcctttctctcccaccatcaattcattgataagtttctccacctcctctctctttacattcgtatcaatttccatcccaatctccc |
4592436 |
T |
|
| Q |
435 |
atgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
|| |||| | ||| |||||||||||||||||||||| || |||||||||||| |
|
|
| T |
4592437 |
attcattgtaaataagtctacagtttgttggctgatcactaaagaatggccaacac |
4592492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 191 - 436
Target Start/End: Complemental strand, 4299909 - 4299671
Alignment:
| Q |
191 |
cacaaccacatttcctgggataaatcactttaattttagtattgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccag |
290 |
Q |
| |
|
||||| || ||||||| | ||||||||||||| || || ||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| | |
|
|
| T |
4299909 |
cacaaacaaatttcctagaataaatcacttta-ttctaatattgtttaagcagaacctccttaataactttgtccaagttcatgtacgaacaaccacctg |
4299811 |
T |
|
| Q |
291 |
ggctggtcgtctcatctgccttctccttcaactccatggccttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacac |
390 |
Q |
| |
|
| | || |||| ||||||||| |||||| | ||||||||||||||||| | |||||| ||||||| |||||||||||||||||| || ||| |
|
|
| T |
4299810 |
gattagtgttctcctctgccttc------aactcccttgccttttgtctcatcttatctcctttctctcccaccatcaattcattgatcagcttttccac |
4299717 |
T |
|
| Q |
391 |
ctcctctcttttcacattagtatcgatttcgattccaatctcccat |
436 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4299716 |
ctcctctctcctcacatttgtatcgatttcgattccaatctcccat |
4299671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 245 - 490
Target Start/End: Original strand, 4579448 - 4579693
Alignment:
| Q |
245 |
acctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggccttttgtctcatct |
344 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||||| || ||||| || || ||| || |||||| ||||||||| || |||||||| ||||||| |
|
|
| T |
4579448 |
acctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcctcatct |
4579547 |
T |
|
| Q |
345 |
tctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatctcccatgaattgca |
444 |
Q |
| |
|
||||| |||| ||||||| |||||||||||| | ||| ||| |||||||||||| ||||||||||| |||||||| |||||||| | ||||| |||||| |
|
|
| T |
4579548 |
tctttgctttctctcccaccatcaattcattaaccagcttctccacctcctctctcttcacattagtgtcgatttcaattccaattttccatgtattgca |
4579647 |
T |
|
| Q |
445 |
gatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
| |||||| ||| || ||| |||||||||||||||||||||||| |
|
|
| T |
4579648 |
taaatatctgcagcttactgggtgatcagcgaaaaatggccaacac |
4579693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 232 - 490
Target Start/End: Complemental strand, 4613847 - 4613589
Alignment:
| Q |
232 |
ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc |
331 |
Q |
| |
|
|||||| |||| ||||| || || |||||||||||||| | ||||||||||| || || || || ||| |||||||||| ||||||||| || ||| |
|
|
| T |
4613847 |
ttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttcaactcaattgcc |
4613748 |
T |
|
| Q |
332 |
ttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatct |
431 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||| |||||||||||||| ||| ||| ||||| ||||| |||||||| || || ||||| || ||||| | |
|
|
| T |
4613747 |
ttttgcctcattttctttcctttctctcccaccatcaattcattgaccagcttctctacctcatctctcttcacattggtgtcaatttccatcccaattt |
4613648 |
T |
|
| Q |
432 |
cccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
||||| |||||| |||||||| ||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
4613647 |
cccattcattgcatatatatctgcagtttgctggctgatccgcgaaaaatggccaacac |
4613589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 230 - 490
Target Start/End: Original strand, 3171742 - 3172002
Alignment:
| Q |
230 |
tattgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatgg |
329 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| |||||||| ||||||||||||||||| || || ||| |||||||||| |||||||||||||| |
|
|
| T |
3171742 |
tattgtttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttcaactccatgg |
3171841 |
T |
|
| Q |
330 |
ccttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaat |
429 |
Q |
| |
|
|| |||| ||||||||||||||||| ||||||| ||||||||| |||||||| ||| |||||| |||| || ||||| ||||| ||||| || ||||| |
|
|
| T |
3171842 |
ccctttgcctcatcttctttcctttctctcccaccatcaattcgttgatcagtttctctacctcccctctctttacattggtatcaatttccatcccaat |
3171941 |
T |
|
| Q |
430 |
ctcccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
|| |||| | ||| ||| ||||| ||| | ||| |||||||| |||||||||| |||| |
|
|
| T |
3171942 |
cttccattcttggcaaataattctactgttaggtggttgatcagcaaaaaatggcctacac |
3172002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 232 - 490
Target Start/End: Original strand, 4505860 - 4506118
Alignment:
| Q |
232 |
ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc |
331 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| || || ||| | |||| ||| |||||||||||| || |
|
|
| T |
4505860 |
ttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcctttgccctctttttcaactccatgacc |
4505959 |
T |
|
| Q |
332 |
ttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatct |
431 |
Q |
| |
|
|||| |||||||| |||||||| ||||| | ||| | ||||| || ||| ||| || | ||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
4505960 |
tttttcctcatcttgtttcctttctctccaaccataatttcatcgaccagcttctctacattttctctattcacattagtatcaatttcgattccaatct |
4506059 |
T |
|
| Q |
432 |
cccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
|| || |||||| ||| |||||||||||||||| |||||| | || || ||||||||| |
|
|
| T |
4506060 |
ccaattcattgcaaataaatctacagtttgttggttgatcaccaaagaacggccaacac |
4506118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 232 - 490
Target Start/End: Original strand, 4557128 - 4557386
Alignment:
| Q |
232 |
ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc |
331 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| || ||||||||||||||||||| || || ||| || |||||| ||||| ||| || | |
|
|
| T |
4557128 |
ttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttcatctcaattatc |
4557227 |
T |
|
| Q |
332 |
ttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatct |
431 |
Q |
| |
|
|||| | ||||||||||||||| || ||| |||||||||||||| || |||| ||||| ||||| |||||||| || || ||||| || ||||||| |
|
|
| T |
4557228 |
tttttccacatcttctttcctttctccccctccatcaattcattgaccaaattctctacctcatctctcttcacattggtgtcaatttccatgccaatct |
4557327 |
T |
|
| Q |
432 |
cccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
|||||| |||||| |||||||| ||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
4557328 |
cccatgtattgcaaatatatctgcagtttgctggctgatcagcaaaaaatggccaacac |
4557386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 232 - 490
Target Start/End: Original strand, 4563714 - 4563972
Alignment:
| Q |
232 |
ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc |
331 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||| ||||||||||||| |||| || || | || || | |||| ||||||||| || ||| |
|
|
| T |
4563714 |
ttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttcttcttcaactcaattgcc |
4563813 |
T |
|
| Q |
332 |
ttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatct |
431 |
Q |
| |
|
||||| | ||||||||||||||| ||||| ||||||||||||||| || ||| |||||| ||||| || ||||| ||||||||||| || ||||||| |
|
|
| T |
4563814 |
ttttgccgcatcttctttcctttctctcctgacatcaattcattgacaagtttctccacctcttctctctttacattcgtatcgatttccatcccaatct |
4563913 |
T |
|
| Q |
432 |
cccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
||||| |||| | ||| |||||||||||||||||||||| | || |||||||||||| |
|
|
| T |
4563914 |
cccattcattgtaaataagtctacagtttgttggctgatcaccaaagaatggccaacac |
4563972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 230 - 375
Target Start/End: Complemental strand, 4504528 - 4504383
Alignment:
| Q |
230 |
tattgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatgg |
329 |
Q |
| |
|
|||| |||||||| ||| |||||||| |||||||||||||| ||||||||||||||||| | || || ||| |||||||||| |||||||||||||| |
|
|
| T |
4504528 |
tattttttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttcttcaactccatgg |
4504429 |
T |
|
| Q |
330 |
ccttttgtctcatcttctttcctttatctcccaacatcaattcatt |
375 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
4504428 |
ccttttgcctcatcttctttcctttctctcccaccatcaattcatt |
4504383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 245 - 490
Target Start/End: Original strand, 4598187 - 4598432
Alignment:
| Q |
245 |
acctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggccttttgtctcatct |
344 |
Q |
| |
|
||||||||||| ||||| || ||||| ||||||||||||| ||| | || || ||| || |||||| |||||| || || | |||||| ||||| | |
|
|
| T |
4598187 |
acctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatcttcaaatcaattgtcttttgcctcattt |
4598286 |
T |
|
| Q |
345 |
tctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatctcccatgaattgca |
444 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| ||| ||| |||||||||||| ||||||||||| || |||| |||||||||||||||| |||||| |
|
|
| T |
4598287 |
tctttcctttatctcccgacatcaattcgttgaccagcttctccacctcctctctcttcacattagtttcaattttgattccaatctcccattcattgca |
4598386 |
T |
|
| Q |
445 |
gatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
|||||||| ||||| | | ||||||| |||||||| || |||||| |
|
|
| T |
4598387 |
aatatatctgcagttggcttgctgatccgcgaaaaagggacaacac |
4598432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 235 - 436
Target Start/End: Complemental strand, 4490481 - 4490280
Alignment:
| Q |
235 |
tttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggccttt |
334 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| ||||||||| |||||| | || || ||| ||||||||| |||||||||| | |||||| |
|
|
| T |
4490481 |
tttaagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttcaactccgtcgccttt |
4490382 |
T |
|
| Q |
335 |
tgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatctccc |
434 |
Q |
| |
|
|| ||||||||||||||||| ||||||| |||||||||||||||||| ||| ||||| ||||| || ||||| ||||| |||| || |||||||||| |
|
|
| T |
4490381 |
tgcctcatcttctttcctttctctcccaccatcaattcattgatcagtttctctacctcttctctctttacattggtatcaattttcatcccaatctccc |
4490282 |
T |
|
| Q |
435 |
at |
436 |
Q |
| |
|
|| |
|
|
| T |
4490281 |
at |
4490280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 235 - 490
Target Start/End: Original strand, 4469809 - 4470064
Alignment:
| Q |
235 |
tttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggccttt |
334 |
Q |
| |
|
|||||||| ||| |||||||| |||||||||||||| ||||||||| ||| ||||| ||||| ||| || |||||| ||| ||||||||| |||| |
|
|
| T |
4469809 |
tttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaactccatgatcttt |
4469908 |
T |
|
| Q |
335 |
tgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatctccc |
434 |
Q |
| |
|
| |||||||||||||| || ||||| | |||||||||||||| || ||| |||||| ||||| ||||||| |||||||||| | ||||||||||| |
|
|
| T |
4469909 |
tccctcatcttctttccattctctccaaccatcaattcattgactagcttctccacctcatctctcttcacatctttatcgatttcaagtccaatctccc |
4470008 |
T |
|
| Q |
435 |
atgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
|| |||||| ||| ||||||| |||| | |||||||| | || |||||||||||| |
|
|
| T |
4470009 |
attcattgcaaataaatctacaatttgctagctgatcaccaaagaatggccaacac |
4470064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 232 - 490
Target Start/End: Original strand, 4461126 - 4461384
Alignment:
| Q |
232 |
ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc |
331 |
Q |
| |
|
||||||||||| ||| |||||||| |||||||||||||| ||||||||| ||| ||||| ||||| ||| || |||||| ||| || |||||| || |
|
|
| T |
4461126 |
ttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaattccatgacc |
4461225 |
T |
|
| Q |
332 |
ttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatct |
431 |
Q |
| |
|
||||| |||||||||||||| | ||||| | ||||||||| |||| || ||| |||||| || || ||||||| |||||||||| | |||||||| |
|
|
| T |
4461226 |
ttttgcctcatcttctttccaatctctccaaccatcaattcgttgaccaacttctccacctcatccctcttcacatctttatcgatttcaagtccaatct |
4461325 |
T |
|
| Q |
432 |
cccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
||||| ||||| ||| |||||||||||| |||||||||| | || |||||||||||| |
|
|
| T |
4461326 |
cccatttgttgcaaataaatctacagtttgctggctgatcaccaaagaatggccaacac |
4461384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 248 - 489
Target Start/End: Original strand, 4568072 - 4568316
Alignment:
| Q |
248 |
tccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgc---cttctccttcaactccatggccttttgtctcatct |
344 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| || ||||||| || || || ||||| ||||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
4568072 |
tccttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttcttcttcttcaactccacggccttttgcctcatct |
4568171 |
T |
|
| Q |
345 |
tctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatctcccatgaattgca |
444 |
Q |
| |
|
| |||||||| | ||||| ||| |||||||| ||||| ||| |||||||||||| |||||||| ||||| ||||||||||| |||||| | ||| || |
|
|
| T |
4568172 |
tttttcctttctgtcccaccattaattcattcatcagcttctccacctcctctctcttcacatttgtatcaatttcgattccgatctccaacttattaca |
4568271 |
T |
|
| Q |
445 |
gatatatctacagtttgttggctgatcagcgaaaaatggccaaca |
489 |
Q |
| |
|
|||||||| |||| ||||||||| |||| ||||| |||||||| |
|
|
| T |
4568272 |
aatatatctgcagtatgttggctgctcagaaaaaaaaggccaaca |
4568316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 232 - 489
Target Start/End: Complemental strand, 4515250 - 4514993
Alignment:
| Q |
232 |
ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc |
331 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||| ||||||| | || ||| | || || ||| |||||||||| ||||||||||| || |
|
|
| T |
4515250 |
ttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaagacccgccaagtctagtgtcctcgtctgccttctttttcaactccataacc |
4515151 |
T |
|
| Q |
332 |
ttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatct |
431 |
Q |
| |
|
|||| ||||| || |||||||| ||||||| |||||||||||||| || || ||||||||||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
4515150 |
tttttcctcattttatttcctttctctcccaccatcaattcattgacaagcttttcaacctcctctctcttcacattcatatcgatttcgatcccaatct |
4515051 |
T |
|
| Q |
432 |
cccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaaca |
489 |
Q |
| |
|
||||| |||||| ||| |||||||||||||||| |||||| | || ||| ||||||| |
|
|
| T |
4515050 |
cccattcattgcaaataaatctacagtttgttggttgatcaccaaagaattgccaaca |
4514993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 232 - 472
Target Start/End: Original strand, 4492958 - 4493198
Alignment:
| Q |
232 |
ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc |
331 |
Q |
| |
|
||||||||||| ||| ||||| || |||||||||||||| ||||||||||||||||||| || ||| |||||||||| ||||||||| |||| |
|
|
| T |
4492958 |
ttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtactgtgtcctcctctgccttctttttcaactccgtggct |
4493057 |
T |
|
| Q |
332 |
ttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatct |
431 |
Q |
| |
|
||| |||||||| |||||||| ||||| | ||| | ||||||| ||||||| ||| | ||||| || ||||| |||||||||| | |||||||| |
|
|
| T |
4493058 |
tttctcctcatcttgtttcctttctctccaaccataatctcattgaccagattctccacattttctctattaacattcctatcgatttctactccaatct |
4493157 |
T |
|
| Q |
432 |
cccatgaattgcagatatatctacagtttgttggctgatca |
472 |
Q |
| |
|
|| || |||||| || ||||||||||||||||||||||| |
|
|
| T |
4493158 |
ccaattcattgcaaatcaatctacagtttgttggctgatca |
4493198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 350 - 488
Target Start/End: Original strand, 4457715 - 4457853
Alignment:
| Q |
350 |
cctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatctcccatgaattgcagatat |
449 |
Q |
| |
|
||||| ||||||| |||||||||||||| | ||| |||||| ||||| |||||||| ||||||||||| || |||||||| ||| |||||| ||| |
|
|
| T |
4457715 |
cctttttctcccaccatcaattcattgactaacttctccacctcatctctcttcacatttgtatcgatttccatcccaatctctcattcattgcaaataa |
4457814 |
T |
|
| Q |
450 |
atctacagtttgttggctgatcagcgaaaaatggccaac |
488 |
Q |
| |
|
||||||| ||||||||| |||| | || |||||||||| |
|
|
| T |
4457815 |
atctacaacttgttggcttatcaccaaagaatggccaac |
4457853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 4300067 - 4299978
Alignment:
| Q |
41 |
aatttcatacaattatatgtatcgttatttctattgaactaaaatgacataataagttacatttatatggcttac-attttaaatataac |
129 |
Q |
| |
|
|||| ||||||| |||| ||||| |||||| ||||||||| |||| ||||||||| | | ||||||||||||||| |||| ||||||||| |
|
|
| T |
4300067 |
aattccatacaaatataagtatcattatttatattgaactcaaataacataataaatcatatttatatggcttacaatttaaaatataac |
4299978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 4260387 - 4260349
Alignment:
| Q |
101 |
atttatatggcttacattttaaatataactagcacctca |
139 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
4260387 |
atttatatggtttacattttaaatataacaagcacctca |
4260349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 291
Target Start/End: Complemental strand, 4392154 - 4392096
Alignment:
| Q |
233 |
tgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagg |
291 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||||||| || ||||| |||||||||| |
|
|
| T |
4392154 |
tgtttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccagg |
4392096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 167 - 490
Target Start/End: Complemental strand, 4879 - 4557
Alignment:
| Q |
167 |
taaaataaattcaagagaagatgacacaaccacatttcctgggataaatcactttaattttagtattgtttaagcatgacctccttaataactttgtcca |
266 |
Q |
| |
|
||||||||||||||||| | || |||||||||| |||| | | ||| || |||||||| | || ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4879 |
taaaataaattcaagaggaaatcacacaaccacgtttcatagaatatataactttaatct-agcattgtttaagcatgacctccttaatcactttgtcca |
4781 |
T |
|
| Q |
267 |
agttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggccttttgtctcatcttctttcctttatctcccaacat |
366 |
Q |
| |
|
|||| |||||||||| ||||||| ||||| |||| |||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| |||| |
|
|
| T |
4780 |
agttcatgtatgaacagccaccagaactggtgttctcctctgccttcttcttcaactccatggccttttgcctcatcttcattcctttatctcccgacat |
4681 |
T |
|
| Q |
367 |
caattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatctcccatgaattgcagatatatctacagtttgttggc |
466 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||| |||||||||||||| ||||| || ||| |||||||| || | ||||||| | | ||||||||||| |
|
|
| T |
4680 |
caattcattgatcatattcgttaccttctctctcttcacattagtatcaatttccataccagtctcccatatatgggagatataccgatagtttgttggc |
4581 |
T |
|
| Q |
467 |
tgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
4580 |
tgatcggcgaaaaatggccaacac |
4557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 225 - 490
Target Start/End: Original strand, 3086416 - 3086681
Alignment:
| Q |
225 |
tttagtattgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactc |
324 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||| |||| ||| ||||| |
|
|
| T |
3086416 |
tttaatattttttaagcaagacctccttaataactttgtccaagttcatgtatgaacaaccaccgatactggtgttctcttctgctttcttctttaactc |
3086515 |
T |
|
| Q |
325 |
catggccttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgatt |
424 |
Q |
| |
|
| | ||||| ||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
3086516 |
tgcgacattttgcctcatcttctttcctttatctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaatt |
3086615 |
T |
|
| Q |
425 |
ccaatctcccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||| ||||| | |||||||||||||| |
|
|
| T |
3086616 |
ccaatctcccatatattgcagatatatctacagtttattggttgatctccataaaatggccaacac |
3086681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 232 - 490
Target Start/End: Original strand, 1674229 - 1674487
Alignment:
| Q |
232 |
ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc |
331 |
Q |
| |
|
||||||||||| || |||||||| |||||||||||||| |||||||||||||||| || || || |||| |||||||||| |||||| ||||||||| |
|
|
| T |
1674229 |
ttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaattccatggcc |
1674328 |
T |
|
| Q |
332 |
ttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatct |
431 |
Q |
| |
|
||||| |||||||| ||||| || ||||||| ||||||||||||||| || ||| || ||||||| |||||||| ||||| ||||| || ||||||| |
|
|
| T |
1674329 |
ttttgcctcatcttttttccattctctcccaccatcaattcattgataagcttctccaaaccctctctcttcacattcgtatcaatttccataccaatct |
1674428 |
T |
|
| Q |
432 |
cccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
|||| ||| || ||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1674429 |
tccattcattacaaataaatctacagtttgttggctgatcagcaaaaaatggccaacac |
1674487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 232 - 486
Target Start/End: Complemental strand, 20863972 - 20863718
Alignment:
| Q |
232 |
ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc |
331 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| | ||||||| ||| | || || || ||| |||||||||| ||||||||| | | | |
|
|
| T |
20863972 |
ttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttcttcttcaactcatttgtc |
20863873 |
T |
|
| Q |
332 |
ttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatct |
431 |
Q |
| |
|
||||| |||||| || ||||||| ||||||| |||||||||||| | ||| || |||||||||||| || ||||| || || |||||||| ||||||| |
|
|
| T |
20863872 |
ttttgcctcatcctccttcctttctctcccaccatcaattcatttaccagcatctccacctcctctctcttgacattggtgtcaatttcgatcccaatct |
20863773 |
T |
|
| Q |
432 |
cccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggcca |
486 |
Q |
| |
|
||||| ||||| || ||||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
20863772 |
cccatttgttgcaaatgtatctgcagtttgtcggctgatcagcaaaaaatggcca |
20863718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 338 - 490
Target Start/End: Complemental strand, 16686290 - 16686138
Alignment:
| Q |
338 |
ctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatctcccatg |
437 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||| || ||| |||||| ||||| |||||||| || || ||||| || |||||||||||| |
|
|
| T |
16686290 |
ctcatcttctttcctttctctcccaccatcaattcattgaccaatttctccacctcatctctcttcacattggtgtcaatttccatgccaatctcccatt |
16686191 |
T |
|
| Q |
438 |
aattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
|||||| |||||||| || |||| |||||||||||| ||||||||||||||| |
|
|
| T |
16686190 |
cattgcaaatatatctgcattttgctggctgatcagcaaaaaatggccaacac |
16686138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 16686396 - 16686337
Alignment:
| Q |
232 |
ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagg |
291 |
Q |
| |
|
||||||||||| |||||| |||| ||||| |||||||| ||||||||||||||||||| |
|
|
| T |
16686396 |
ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccagg |
16686337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 231 - 489
Target Start/End: Complemental strand, 3849 - 3591
Alignment:
| Q |
231 |
attgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggc |
330 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||| ||||||||| |||||| || || || |||| |||||||||| ||| ||||||| ||| |
|
|
| T |
3849 |
attgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctttaactccacggc |
3750 |
T |
|
| Q |
331 |
cttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatc |
430 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||| | |||||||||||| || ||| |||||| ||||| ||||||| |||||||||| | ||||||| |
|
|
| T |
3749 |
cttttgcctcatcttctttcctttctctcccaccgtcaattcattgactagcttctccacctcatctctcttcacatccatatcgatttcaagtccaatc |
3650 |
T |
|
| Q |
431 |
tcccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaaca |
489 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||||||||||||| | || ||||||||||| |
|
|
| T |
3649 |
tcccattcgttgcaaataaatctacagtttgttggctgatcaccaaagaatggccaaca |
3591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 8e-50; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 210 - 490
Target Start/End: Original strand, 24102981 - 24103260
Alignment:
| Q |
210 |
ataaatcactttaattttagtattgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgc |
309 |
Q |
| |
|
|||||| |||||||| | || |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| || || |||| ||||| |
|
|
| T |
24102981 |
ataaatgactttaatct-agaattgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgc |
24103079 |
T |
|
| Q |
310 |
cttctccttcaactccatggccttttgtctcatcttctttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacatta |
409 |
Q |
| |
|
||||| ||| ||||||| | ||||||| ||||| ||||||| || ||||||| |||||||||||||| | ||| || || ||||| |||||||| |
|
|
| T |
24103080 |
cttcttcttgaactccaagaccttttgcttcatcgtctttccgttctctcccaccatcaattcattgactaacttctcgacgtcatctctcttcacattt |
24103179 |
T |
|
| Q |
410 |
gtatcgatttcgattccaatctcccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
||||||||||||| ||||||||||||| || ||| ||| |||||||||||||||| |||||| | || |||||||||||| |
|
|
| T |
24103180 |
gtatcgatttcgagtccaatctcccattcatagcaaataaatctacagtttgttggttgatcaccaaagaatggccaacac |
24103260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 248 - 490
Target Start/End: Complemental strand, 28000212 - 27999970
Alignment:
| Q |
248 |
tccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggccttttgtctcatcttct |
347 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||| || || || |||| |||||||| | ||||||||||||||||||||| |||||||| | |
|
|
| T |
28000212 |
tccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttcttcaactccatggccttttgcctcatctttt |
28000113 |
T |
|
| Q |
348 |
ttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatctcccatgaattgcagat |
447 |
Q |
| |
|
|||| || ||||||| ||||||||||||||| || ||| || |||||| | |||||||| |||| ||||| || ||||||| |||| ||| || || |
|
|
| T |
28000112 |
ttccattctctcccaccatcaattcattgataagcttctccaaatcctctatcttcacattcatatcaatttccataccaatcttccattcattacaaat |
28000013 |
T |
|
| Q |
448 |
atatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
28000012 |
aaatctacagtttgttggctgatcagcaaaaaatgaccaacac |
27999970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 24102840 - 24102950
Alignment:
| Q |
34 |
gtaaatgaatttcatacaattatatgtatcgttatttctattgaactaaaatgacataataagttacatttatatggcttacattttaaatataactagc |
133 |
Q |
| |
|
|||| |||||| |||||||||||| | | | |||||| |||||||| ||||| ||||||||||| | | |||||||| |||||||||||||| ||||||| |
|
|
| T |
24102840 |
gtaattgaattccatacaattatacgaaacattatttatattgaaccaaaatcacataataagtcatacttatatggtttacattttaaatagaactagc |
24102939 |
T |
|
| Q |
134 |
acctcacacta |
144 |
Q |
| |
|
||||||||||| |
|
|
| T |
24102940 |
acctcacacta |
24102950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 24109282 - 24109397
Alignment:
| Q |
34 |
gtaaatgaatttcatacaattatatgtatcgttatttctattgaactaaaatga-----cataataagttacatttatatggcttacattttaaatataa |
128 |
Q |
| |
|
|||| ||||||||||| | ||||||| | | |||||| | |||||||||||| | |||||||||| | | |||||||||||||||||||||||||| |
|
|
| T |
24109282 |
gtaactgaatttcataaagttatatgaaacattatttatgttgaactaaaattaaatcacataataagtcatacttatatggcttacattttaaatataa |
24109381 |
T |
|
| Q |
129 |
ctagcacctcacacta |
144 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
24109382 |
ccagcacctcacacta |
24109397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 248 - 490
Target Start/End: Original strand, 1281133 - 1281375
Alignment:
| Q |
248 |
tccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggccttttgtctcatcttct |
347 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||||||||| || || || |||| || ||| || |||||| ||||||||||||| |||||| |||| |
|
|
| T |
1281133 |
tccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgccgccttcttcaattccatggccttttctctcatattct |
1281232 |
T |
|
| Q |
348 |
ttcctttatctcccaacatcaattcattgatcagattcgacacctcctctcttttcacattagtatcgatttcgattccaatctcccatgaattgcagat |
447 |
Q |
| |
|
|||||| ||| || |||||||||||||||| || | |||||||||||| |||||||| ||||||||||| || ||||||| |||| ||| || || |
|
|
| T |
1281233 |
ttccttcatccccggctatcaattcattgatcaacttagccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaat |
1281332 |
T |
|
| Q |
448 |
atatctacagtttgttggctgatcagcgaaaaatggccaacac |
490 |
Q |
| |
|
| ||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
1281333 |
aaatctacagtctgttggctgatcagcaaaaaatggccaacac |
1281375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 488
Target Start/End: Complemental strand, 3657 - 3557
Alignment:
| Q |
388 |
cacctcctctcttttcacattagtatcgatttcgattccaatctcccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaa |
487 |
Q |
| |
|
|||||||||||| |||||||| | ||| ||||| |||||||||||||| ||| || || ||||||||||||||| || || | ||||||||||||| |
|
|
| T |
3657 |
cacctcctctctcttcacattggaatctatttcacttccaatctcccattcattccaaatgcatctacagtttgttgagtgttcggggaaaaatggccaa |
3558 |
T |
|
| Q |
488 |
c |
488 |
Q |
| |
|
| |
|
|
| T |
3557 |
c |
3557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University