View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5781_low_14 (Length: 483)

Name: NF5781_low_14
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5781_low_14
NF5781_low_14
[»] chr6 (7 HSPs)
chr6 (180-460)||(20130361-20130641)
chr6 (180-460)||(22202229-22202509)
chr6 (292-410)||(27966248-27966366)
chr6 (289-410)||(24478580-24478701)
chr6 (302-410)||(2946938-2947046)
chr6 (410-457)||(20087950-20087997)
chr6 (88-178)||(26909594-26909684)
[»] chr4 (6 HSPs)
chr4 (180-410)||(31192717-31192946)
chr4 (287-410)||(8804183-8804306)
chr4 (287-410)||(19667259-19667382)
chr4 (285-404)||(1979399-1979518)
chr4 (410-456)||(16739237-16739283)
chr4 (286-350)||(4877211-4877275)
[»] chr2 (9 HSPs)
chr2 (180-410)||(38455613-38455842)
chr2 (180-410)||(35671302-35671531)
chr2 (287-407)||(13803932-13804052)
chr2 (287-410)||(27092531-27092654)
chr2 (303-410)||(19699181-19699288)
chr2 (331-410)||(20035622-20035701)
chr2 (289-410)||(8355847-8355968)
chr2 (285-410)||(10379829-10379954)
chr2 (129-187)||(25808568-25808626)
[»] chr7 (3 HSPs)
chr7 (287-410)||(6112908-6113031)
chr7 (285-410)||(43017576-43017701)
chr7 (129-179)||(23068789-23068839)
[»] chr3 (7 HSPs)
chr3 (285-394)||(11428371-11428480)
chr3 (304-410)||(9008529-9008635)
chr3 (298-408)||(48574054-48574164)
chr3 (337-410)||(39295754-39295827)
chr3 (410-460)||(8820876-8820926)
chr3 (108-178)||(18761695-18761765)
chr3 (285-410)||(33818652-33818777)
[»] chr5 (3 HSPs)
chr5 (88-179)||(20745868-20745959)
chr5 (285-408)||(31129505-31129628)
chr5 (413-458)||(21485097-21485142)
[»] chr1 (3 HSPs)
chr1 (108-179)||(10979575-10979646)
chr1 (410-460)||(27120976-27121026)
chr1 (302-410)||(6192135-6192243)


Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 180 - 460
Target Start/End: Complemental strand, 20130641 - 20130361
Alignment:
Q  180 gtttaacctcagtgtctatcataagactgatgtgaaaaccttgctgttaaattttaaagagggcgtaccacgtcagtagaataaaggcgagatgtggnnn 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  20130641 gtttaacctcagtgtctatcataagactgatgtgaaaaccttgctgttaaattttaaagagggcgtaccacgtcagtagaataaaggcgagatgtggaaa 20130542  T
Q  280 nnnnngatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgttttt 379  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20130541 aaaaagatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgttttt 20130442  T
Q  380 caactgatgtgaaaaatcctttctgtagtagcttagcccagcttgatcgttcgggtcacgtgagctccactttcaacatca 460  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20130441 caactgatgtgaaaaatcctttctgtagtagcttagcccagcttgatcgttcgggtcacgtgagctccactttcaacatca 20130361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 180 - 460
Target Start/End: Original strand, 22202229 - 22202509
Alignment:
Q  180 gtttaacctcagtgtctatcataagactgatgtgaaaaccttgctgttaaattttaaagagggcgtaccacgtcagtagaataaaggcgagatgtggnnn 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  22202229 gtttaacctcagtgtctatcataagactgatgtgaaaaccttgctgttaaattttaaagagggcgtaccacgtcagtagaataaaggcgagatgtggaaa 22202328  T
Q  280 nnnnngatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgttttt 379  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22202329 aaaaagatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgttttt 22202428  T
Q  380 caactgatgtgaaaaatcctttctgtagtagcttagcccagcttgatcgttcgggtcacgtgagctccactttcaacatca 460  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22202429 caactgatgtgaaaaatcctttctgtagtagcttagcccagcttgatcgttcgggtcacgtgagctccactttcaacatca 22202509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 292 - 410
Target Start/End: Original strand, 27966248 - 27966366
Alignment:
Q  292 catcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatgtga 391  Q
    |||||||||  || |||||||||| | |||| |||| | |||||||||||| ||||||| ||||||||||||||  ||||||  ||||||||||||||||    
T  27966248 catcagttcgtacatgatgtgaaatggtgtgcacattccacatcatatcaccttacatcggttgccacctgatgtgaaaagtagttttcaactgatgtga 27966347  T
Q  392 aaaatcctttctgtagtag 410  Q
    ||| |  ||||||||||||    
T  27966348 aaacttatttctgtagtag 27966366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 410
Target Start/End: Original strand, 24478580 - 24478701
Alignment:
Q  289 tcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatg 388  Q
    ||||||||||||  ||||||||||||| || ||| |||| | |||||||  ||| ||||||||||||||| ||||||  ||||||  |||  ||||||||    
T  24478580 tcacatcagttcgtacctgatgtgaaatgacgtgcacattccacatcatgacaccttacatcagttgccatctgatgtgaaaagtagtttctaactgatg 24478679  T
Q  389 tgaaaaatcctttctgtagtag 410  Q
    |||||| |  ||||||||||||    
T  24478680 tgaaaacttatttctgtagtag 24478701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 302 - 410
Target Start/End: Complemental strand, 2947046 - 2946938
Alignment:
Q  302 aacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatgtgaaaaatccttt 401  Q
    |||||||||||||| |||||| || ||| |||||||||||| ||||||| || || | ||||||  |||| |  ||||||||| |||| ||||||| |||    
T  2947046 aacctgatgtgaaaggatgtggacttaccacatcatatcaccttacatcggtggcaaactgatgtgaaaaatcattttcaactaatgtaaaaaatcattt 2946947  T
Q  402 ctgtagtag 410  Q
    |||||||||    
T  2946946 ctgtagtag 2946938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 410 - 457
Target Start/End: Complemental strand, 20087997 - 20087950
Alignment:
Q  410 gcttagcccagcttgatcgttcgggtcacgtgagctccactttcaaca 457  Q
    |||||||||| ||| ||||||||| |||||||||||||||||||||||    
T  20087997 gcttagcccaacttaatcgttcggatcacgtgagctccactttcaaca 20087950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 26909594 - 26909684
Alignment:
Q  88 gctattataggtatcaaggccagctttttaatagcactccatctaaaaatgctattaaatgggtgctaccaaatgtcaaaattgacgtagt 178  Q
    |||||||||  |||||| ||||| |||||  |||||||   ||||||| ||||||||| || | ||||| |||||||||||||| ||||||    
T  26909594 gctattatacttatcaaagccagttttttgttagcactttttctaaaagtgctattaactgagcgctactaaatgtcaaaattggcgtagt 26909684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 180 - 410
Target Start/End: Original strand, 31192717 - 31192946
Alignment:
Q  180 gtttaacctcagtgtctatcataagactgatgtgaaaaccttgctgttaaattttaaagagggcgtaccacgtcagtagaataaaggcgagatgtggnnn 279  Q
    ||||||| |||||||||||||||| ||||||||||||| | |  ||||||||||||| | |   ||||||| ||||  |||||||||| ||||||||       
T  31192717 gtttaacttcagtgtctatcataaaactgatgtgaaaaacctattgttaaattttaatgcgaatgtaccacatcagcggaataaaggccagatgtggaaa 31192816  T
Q  280 nnnnngatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgttttt 379  Q
         ||||||||||||||||  |||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||| ||||||| ||||    
T  31192817 agaa-gatttcacatcagttcgtacctgatgtgaaaagatgtgaacatactacatcatgacaccttacatcagttgccacctgatgcgaaaagtgctttt 31192915  T
Q  380 caactgatgtgaaaaatcctttctgtagtag 410  Q
    |||||||||||||||||||||||||||||||    
T  31192916 caactgatgtgaaaaatcctttctgtagtag 31192946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 287 - 410
Target Start/End: Original strand, 8804183 - 8804306
Alignment:
Q  287 tttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactga 386  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||||  ||| ||||||||||||||||||||||||||||||  |||||||||||    
T  8804183 tttcacatcagtttgtacctgatgtgaaaagatgcgaacatactacatcatgacaccttacatcagttgccacctgatgcaaaaagtacttttcaactga 8804282  T
Q  387 tgtgaaaaatcctttctgtagtag 410  Q
    ||||||||||| ||| ||||||||    
T  8804283 tgtgaaaaatcatttatgtagtag 8804306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 287 - 410
Target Start/End: Complemental strand, 19667382 - 19667259
Alignment:
Q  287 tttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactga 386  Q
    |||||||||||||   |||||||||||||||||| | ||||||||||||||  ||| ||||||||||||||||||||||| ||||||| |||| || |||    
T  19667382 tttcacatcagtttgtacctgatgtgaaaagatgcggacatactacatcatgacaccttacatcagttgccacctgatgcgaaaagtgctttttaattga 19667283  T
Q  387 tgtgaaaaatcctttctgtagtag 410  Q
    ||||||||||| ||||||||||||    
T  19667282 tgtgaaaaatcatttctgtagtag 19667259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 285 - 404
Target Start/End: Complemental strand, 1979518 - 1979399
Alignment:
Q  285 gatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaact 384  Q
    ||||| ||||||||| ||||| ||||||||| |||||| || ||| ||||||| |||| ||||||| |||| || | ||||  |||| |  |||||||||    
T  1979518 gattttacatcagttgaaacccgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaaccgatgtgaaaaatcattttcaact 1979419  T
Q  385 gatgtgaaaaatcctttctg 404  Q
    ||||||||||||| ||||||    
T  1979418 gatgtgaaaaatcatttctg 1979399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 456
Target Start/End: Complemental strand, 16739283 - 16739237
Alignment:
Q  410 gcttagcccagcttgatcgttcgggtcacgtgagctccactttcaac 456  Q
    |||||||||||||||||||||| |||||| ||||||| || ||||||    
T  16739283 gcttagcccagcttgatcgttcaggtcacatgagctctaccttcaac 16739237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 4877211 - 4877275
Alignment:
Q  286 atttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatc 350  Q
    |||||||||||||   ||| |||||||||| |||||| || ||| |||||||||||| |||||||    
T  4877211 atttcacatcagtcgcaacgtgatgtgaaaggatgtggacttaccacatcatatcaccttacatc 4877275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 180 - 410
Target Start/End: Complemental strand, 38455842 - 38455613
Alignment:
Q  180 gtttaacctcagtgtctatcataagactgatgtgaaaaccttgctgttaaattttaaagagggcgtaccacgtcagtagaataaaggcgagatgtggnnn 279  Q
    ||||||| |||||||||||||||| ||||||||||||| | |  ||||||||||||||| |  |||||||| ||||  |||||||||| ||||||||       
T  38455842 gtttaacttcagtgtctatcataaaactgatgtgaaaaacctattgttaaattttaaagcgaacgtaccacatcagcggaataaaggccagatgtggaaa 38455743  T
Q  280 nnnnngatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgttttt 379  Q
         ||||||||||||||||  ||||||||||||||||||||||||||| |||||||  ||| ||||||||||||||||||||||| ||||||| ||||    
T  38455742 agaa-gatttcacatcagttcgtacctgatgtgaaaagatgtgaacataccacatcatgacaccttacatcagttgccacctgatgcgaaaagtgctttt 38455644  T
Q  380 caactgatgtgaaaaatcctttctgtagtag 410  Q
    |||||||||| ||||||||||||||||||||    
T  38455643 caactgatgtaaaaaatcctttctgtagtag 38455613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 180 - 410
Target Start/End: Complemental strand, 35671531 - 35671302
Alignment:
Q  180 gtttaacctcagtgtctatcataagactgatgtgaaaaccttgctgttaaattttaaagagggcgtaccacgtcagtagaataaaggcgagatgtggnnn 279  Q
    ||||||| |||||||||||||||| ||||||||||||| | |  |||||||||| || | |  |||||||| ||||| |||||||||| ||||||||       
T  35671531 gtttaacttcagtgtctatcataaaactgatgtgaaaaacctattgttaaatttgaaggcgaacgtaccacatcagtggaataaaggccagatgtggaaa 35671432  T
Q  280 nnnnngatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgttttt 379  Q
         ||||||||||||||||  ||||||||| ||||||||| ||||||| |||||||  ||| ||||||||||||||||||||||| ||||||| ||||    
T  35671431 agca-gatttcacatcagttcgtacctgatgtaaaaagatgtaaacataccacatcatgacaccttacatcagttgccacctgatgcgaaaagtgctttt 35671333  T
Q  380 caactgatgtgaaaaatcctttctgtagtag 410  Q
    |||||||||||||||||||||||||||||||    
T  35671332 caactgatgtgaaaaatcctttctgtagtag 35671302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 287 - 407
Target Start/End: Complemental strand, 13804052 - 13803932
Alignment:
Q  287 tttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactga 386  Q
    ||||||||||| |   |||||||||||||||||| | ||||||||||||||  ||| ||||||||||||||||||||||| |||||||||||||||||||    
T  13804052 tttcacatcagcttgtacctgatgtgaaaagatgcggacatactacatcatgacacgttacatcagttgccacctgatgcgaaaagtgtttttcaactga 13803953  T
Q  387 tgtgaaaaatcctttctgtag 407  Q
    ||||||||| | |||||||||    
T  13803952 tgtgaaaaaacatttctgtag 13803932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 287 - 410
Target Start/End: Complemental strand, 27092654 - 27092531
Alignment:
Q  287 tttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactga 386  Q
    |||||||||||||   |||||||||||||||||| | ||||||||||||||  ||| ||| ||||||||||||||||| | || |||| |||||||||||    
T  27092654 tttcacatcagtttgtacctgatgtgaaaagatgcggacatactacatcatgacaccttatatcagttgccacctgatacgaatagtgcttttcaactga 27092555  T
Q  387 tgtgaaaaatcctttctgtagtag 410  Q
    | ||||||||| ||||||||||||    
T  27092554 tttgaaaaatcatttctgtagtag 27092531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 303 - 410
Target Start/End: Complemental strand, 19699288 - 19699181
Alignment:
Q  303 acctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatgtgaaaaatcctttc 402  Q
    |||||||||||||||||| | ||||||||||||||  ||  ||| | ||||||||||||||||| ||||||| |||||||||||||||||||||| |||     
T  19699288 acctgatgtgaaaagatgcggacatactacatcatgacatcttagaacagttgccacctgatgcgaaaagtgcttttcaactgatgtgaaaaatcattta 19699189  T
Q  403 tgtagtag 410  Q
    ||||||||    
T  19699188 tgtagtag 19699181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 331 - 410
Target Start/End: Complemental strand, 20035701 - 20035622
Alignment:
Q  331 acatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatgtgaaaaatcctttctgtagtag 410  Q
    |||||||  ||| ||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| ||||||||    
T  20035701 acatcatgacaccttacatcagttgccacctgatgcgaaaagtgcttttcaactgatgtaaaaaatcctttatgtagtag 20035622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 289 - 410
Target Start/End: Complemental strand, 8355968 - 8355847
Alignment:
Q  289 tcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatg 388  Q
    ||||||||||||  ||||||||||||| |||||  |||||| |||||||||||||||||||| |  || ||||||||  ||||||  ||| |||||||||    
T  8355968 tcacatcagttcgtacctgatgtgaaatgatgttgacataccacatcatatcactttacatcggacgctacctgatgtgaaaagtactttccaactgatg 8355869  T
Q  389 tgaaaaatcctttctgtagtag 410  Q
    | |||| || ||||||||||||    
T  8355868 taaaaactcatttctgtagtag 8355847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 285 - 410
Target Start/End: Complemental strand, 10379954 - 10379829
Alignment:
Q  285 gatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaact 384  Q
    ||||||||| ||||  | ||| || |||||| |||||| || ||| ||||||| |||||||||||| |||||||||||||| ||||| |  ||| |||||    
T  10379954 gatttcacaacagtctagacccgaggtgaaaggatgtggacttacgacatcatgtcactttacatcggttgccacctgatgtaaaaactcgtttccaact 10379855  T
Q  385 gatgtgaaaaatcctttctgtagtag 410  Q
    ||||| |||| ||| |||||||||||    
T  10379854 gatgtaaaaactccgttctgtagtag 10379829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 25808626 - 25808568
Alignment:
Q  129 tctaaaaatgctattaaatgggtgctaccaaatgtcaaaattgacgtagtggtttaacc 187  Q
    ||||||| || ||||||||||| ||||| |||||||||||||| ||||||| |||||||    
T  25808626 tctaaaagtgttattaaatgggcgctactaaatgtcaaaattggcgtagtgatttaacc 25808568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 287 - 410
Target Start/End: Original strand, 6112908 - 6113031
Alignment:
Q  287 tttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactga 386  Q
    |||||||||||||   ||||||||||||||||||   ||||||||||||||  ||| |||||||||||||| |||||||| ||||||| |||||||||||    
T  6112908 tttcacatcagtttgtacctgatgtgaaaagatgcagacatactacatcatgacaccttacatcagttgccgcctgatgcgaaaagtgcttttcaactga 6113007  T
Q  387 tgtgaaaaatcctttctgtagtag 410  Q
    ||||||||||| ||||||||||||    
T  6113008 tgtgaaaaatcgtttctgtagtag 6113031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 410
Target Start/End: Complemental strand, 43017701 - 43017576
Alignment:
Q  285 gatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaact 384  Q
    |||||||||||| |   |||||||||||||| |||||| || ||| |||||||||||| ||||||| ||| | | ||||||  |||| |  ||| |||||    
T  43017701 gatttcacatcaatcgcaacctgatgtgaaaggatgtggacttaccacatcatatcaccttacatcggttacaaactgatgtgaaaactcatttccaact 43017602  T
Q  385 gatgtgaaaaatcctttctgtagtag 410  Q
    ||| | ||||||| ||||||||||||    
T  43017601 gatataaaaaatcatttctgtagtag 43017576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 23068789 - 23068839
Alignment:
Q  129 tctaaaaatgctattaaatgggtgctaccaaatgtcaaaattgacgtagtg 179  Q
    ||||||| |||||||||||||| | ||| |||||||||||||| |||||||    
T  23068789 tctaaaagtgctattaaatgggcgttactaaatgtcaaaattggcgtagtg 23068839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 285 - 394
Target Start/End: Original strand, 11428371 - 11428480
Alignment:
Q  285 gatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaact 384  Q
    ||||||||||| || |||||||||||| ||| |||||| || ||| |||||||||||| |||||||||||||||||||||  ||||| |  ||| |||||    
T  11428371 gatttcacatctgtccaaacctgatgtaaaaggatgtggacttaccacatcatatcaccttacatcagttgccacctgatttaaaaactcatttccaact 11428470  T
Q  385 gatgtgaaaa 394  Q
    ||||| ||||    
T  11428471 gatgtaaaaa 11428480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 410
Target Start/End: Complemental strand, 9008635 - 9008529
Alignment:
Q  304 cctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatgtgaaaaatcctttct 403  Q
    |||||| ||||| |||||| || ||  |||||||||||||||||||| ||||| | ||||||| |||| |  |||||||||||||| ||||||| |||||    
T  9008635 cctgatctgaaaggatgtggacttagcacatcatatcactttacatcggttgcaaactgatgcgaaaaatcattttcaactgatgtaaaaaatcatttct 9008536  T
Q  404 gtagtag 410  Q
     ||||||    
T  9008535 atagtag 9008529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 298 - 408
Target Start/End: Original strand, 48574054 - 48574164
Alignment:
Q  298 ttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatgtgaaaaatc 397  Q
    |||||| ||||||||||| | |||| || ||| |||||||  ||| ||||||||||||||||||||||  |||| |  |||||||||||||| |||| ||    
T  48574054 ttcaaaactgatgtgaaagggtgtggacttaccacatcatgacaccttacatcagttgccacctgatgtgaaaactcattttcaactgatgtaaaaactc 48574153  T
Q  398 ctttctgtagt 408  Q
    | || ||||||    
T  48574154 cattttgtagt 48574164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 410
Target Start/End: Original strand, 39295754 - 39295827
Alignment:
Q  337 tatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatgtgaaaaatcctttctgtagtag 410  Q
    |||||||||||||| | ||||||||||||  ||||||  ||| |||||||||| |||| || ||||||||||||    
T  39295754 tatcactttacatcggatgccacctgatgtgaaaagtactttccaactgatgtaaaaactcatttctgtagtag 39295827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 460
Target Start/End: Complemental strand, 8820926 - 8820876
Alignment:
Q  410 gcttagcccagcttgatcgttcgggtcacgtgagctccactttcaacatca 460  Q
    ||||||| ||||||||| |||| ||||| |||||||||||| |||||||||    
T  8820926 gcttagctcagcttgattgttcaggtcatgtgagctccactatcaacatca 8820876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 18761695 - 18761765
Alignment:
Q  108 cagctttttaatagcactccatctaaaaatgctattaaatgggtgctaccaaatgtcaaaattgacgtagt 178  Q
    |||||||||||||||| ||| | ||||||||| ||||||| || ||||  |||||| ||||||| ||||||    
T  18761695 cagctttttaatagcattccttttaaaaatgccattaaataggcgctaataaatgttaaaattggcgtagt 18761765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 410
Target Start/End: Original strand, 33818652 - 33818777
Alignment:
Q  285 gatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaact 384  Q
    |||||| ||||||||   |||||| |||||| |||||| || ||| |||||||  ||| ||||||||||||| | ||||||  |||| |  ||| |||||    
T  33818652 gatttcccatcagttgcgacctgaagtgaaaggatgtggacttaccacatcatgacaccttacatcagttgcaaactgatgtgaaaaatcatttccaact 33818751  T
Q  385 gatgtgaaaaatcctttctgtagtag 410  Q
    ||||| ||||||  |||||| |||||    
T  33818752 gatgtaaaaaataatttctgcagtag 33818777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 179
Target Start/End: Complemental strand, 20745959 - 20745868
Alignment:
Q  88 gctattataggtatcaaggccagctttttaatagcactccatctaaaaatgctattaaatgggtgctaccaaatgtcaaaattgacgtagtg 179  Q
    |||||||||  |||||| ||||| |||||  |||||||   ||||||| |||||||||||| ||||||| |||||||||||||| |||||||    
T  20745959 gctattatacttatcaaagccagttttttgttagcactttttctaaaagtgctattaaatgagtgctactaaatgtcaaaattggcgtagtg 20745868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 408
Target Start/End: Complemental strand, 31129628 - 31129505
Alignment:
Q  285 gatttcacatcagttcaaacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaact 384  Q
    |||||||||||||| || | |||||| |||| | |||| || ||| |||||||  ||| ||||||||||||||||||||||  |||| |  |||||||||    
T  31129628 gatttcacatcagtccacaactgatgggaaagggtgtggacttaccacatcatgacaccttacatcagttgccacctgatgtgaaaactcattttcaact 31129529  T
Q  385 gatgtgaaaaatcctttctgtagt 408  Q
    ||||| |||| ||| |||| ||||    
T  31129528 gatgtaaaaactccattctatagt 31129505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 458
Target Start/End: Complemental strand, 21485142 - 21485097
Alignment:
Q  413 tagcccagcttgatcgttcgggtcacgtgagctccactttcaacat 458  Q
    |||| |||||||||||||| |||||| |||||||||| ||||||||    
T  21485142 tagctcagcttgatcgttcaggtcacatgagctccacattcaacat 21485097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 179
Target Start/End: Complemental strand, 10979646 - 10979575
Alignment:
Q  108 cagctttttaatagcactccatctaaaaatgctattaaatgggtgctaccaaatgtcaaaattgacgtagtg 179  Q
    |||||||||||||||| ||| | ||||||||||||||||| || ||||  |||||| ||||||| |||||||    
T  10979646 cagctttttaatagcattccttttaaaaatgctattaaataggcgctaataaatgttaaaattggcgtagtg 10979575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 460
Target Start/End: Original strand, 27120976 - 27121026
Alignment:
Q  410 gcttagcccagcttgatcgttcgggtcacgtgagctccactttcaacatca 460  Q
    ||||||| |||||||||||||| |||||||||||||||| | |||||||||    
T  27120976 gcttagctcagcttgatcgttcaggtcacgtgagctccattgtcaacatca 27121026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 410
Target Start/End: Original strand, 6192135 - 6192243
Alignment:
Q  302 aacctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatgtgaaaaatccttt 401  Q
    |||||||||||||||| |||| || ||| |||||||  ||| ||||||| || |  | ||||||  |||| |  |||||||||||||| |||| ||| ||    
T  6192135 aacctgatgtgaaaaggtgtggacttaccacatcatgacaccttacatcggtggtaaactgatgtgaaaactcattttcaactgatgtaaaaactccatt 6192234  T
Q  402 ctgtagtag 410  Q
    |||||||||    
T  6192235 ctgtagtag 6192243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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