View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5781_low_18 (Length: 395)
Name: NF5781_low_18
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 12 - 329
Target Start/End: Complemental strand, 5690122 - 5689805
Alignment:
| Q |
12 |
atgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctagctgtgactgg |
111 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5690122 |
atgaagcaatctacagtttccattttggtgattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctagctgtgactgg |
5690023 |
T |
|
| Q |
112 |
tggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggtattaag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5690022 |
tggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggtattaag |
5689923 |
T |
|
| Q |
212 |
gatttgccacaagagcttcttggtaagcatgttgagccttctactgctgttgaagcttctcctgctgctaaggctcttgagcctcatgctgtcattgctg |
311 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5689922 |
gatttgccacaagagcttcttggtaaacatgttgagccttctcctgctgttgaagcttctcctgctgctaaagctcttgagcctcatgctgtcattgctg |
5689823 |
T |
|
| Q |
312 |
gttttaccaattagttaa |
329 |
Q |
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||||||| |||||||||| |
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| T |
5689822 |
gttttacaaattagttaa |
5689805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 8e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 12 - 318
Target Start/End: Complemental strand, 25914803 - 25914500
Alignment:
| Q |
12 |
atgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctagctgtgactgg |
111 |
Q |
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||||||||||||||||||| || ||||||| |||||||| |||| || |||||||| || |||||||| |||||||| |||||| |||||||||| |
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| T |
25914803 |
atgaagcaatctacagttttcacgttggagactatggtcaaatagctgtgcaaggaccttacctaacctat---gaggacacatatctaactgtgactgg |
25914707 |
T |
|
| Q |
112 |
tggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggtattaag |
211 |
Q |
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|||| ||||||| ||||||||||||| || ||||||||| | ||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| |
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| T |
25914706 |
tggtactggaatttttgaaggtgttacaggccaagtgaagctcaatcaaattgtttttccatttaagattttctacacattttatttgaagggtattaag |
25914607 |
T |
|
| Q |
212 |
gatttgccacaagagcttcttggtaagcatgttgagccttctactgctgttgaagcttctcctgctgctaaggctcttgagcctcatgctgtcattgctg |
311 |
Q |
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|||||||||||||||||||||||||| | ||||||||| || |||||||||||||||||||||||| ||||||||||| |||||| |||||||| |
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| T |
25914606 |
gatttgccacaagagcttcttggtaaaccagttgagcctaaccctaatgttgaagcttctcctgctgctaaagctcttgagccacatgctaccattgctg |
25914507 |
T |
|
| Q |
312 |
gttttac |
318 |
Q |
| |
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||||||| |
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| T |
25914506 |
gttttac |
25914500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 6792565 - 6792803
Alignment:
| Q |
12 |
atgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctagctgtgactgg |
111 |
Q |
| |
|
|||||||||| || ||||| |||||||||| |||||||| | | || ||||| | |||||||| ||| ||||| |||||| | ||||||||||| |
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| T |
6792565 |
atgaagcaatatatagtttttattttggagagtatggtcatatttctgtgcaaggttcttatttaacttatgaggaggatacttatttggctgtgactgg |
6792664 |
T |
|
| Q |
112 |
tggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggtattaag |
211 |
Q |
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||| |||||||||||||||||||| | |||||||| ||| | ||||||||||| |||||||| ||||| || || ||||||||| | | ||||||||| |
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| T |
6792665 |
tggaactggaatatttgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagatattttacacattttatcttaagggtattaag |
6792764 |
T |
|
| Q |
212 |
gatttgccacaagagcttcttggtaagcatgttgagcct |
250 |
Q |
| |
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||||||||||| ||| |||||| ||| | | |||||||| |
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| T |
6792765 |
gatttgccacatgagtttcttgttaatcctattgagcct |
6792803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 222
Target Start/End: Original strand, 6800131 - 6800246
Alignment:
| Q |
107 |
actggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggta |
206 |
Q |
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|||||||| |||||||||||||||||||| | |||||||| ||| | ||||||||||| |||||||| ||| | || || ||||||||| | | |||| |
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| T |
6800131 |
actggtggaactggaatatttgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagctattttacacattttatcttatgggta |
6800230 |
T |
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| Q |
207 |
ttaaggatttgccaca |
222 |
Q |
| |
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|||||||||||||||| |
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| T |
6800231 |
ttaaggatttgccaca |
6800246 |
T |
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