View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5781_low_19 (Length: 369)

Name: NF5781_low_19
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5781_low_19
NF5781_low_19
[»] chr3 (9 HSPs)
chr3 (100-360)||(24227470-24227729)
chr3 (207-358)||(28675261-28675412)
chr3 (212-360)||(30167682-30167830)
chr3 (220-351)||(9378761-9378892)
chr3 (212-278)||(6176815-6176881)
chr3 (218-275)||(15484126-15484183)
chr3 (212-360)||(13448133-13448281)
chr3 (223-275)||(36708621-36708673)
chr3 (212-360)||(49732270-49732418)
[»] chr5 (5 HSPs)
chr5 (151-357)||(587174-587380)
chr5 (212-360)||(10487243-10487391)
chr5 (223-278)||(29094854-29094909)
chr5 (212-351)||(32917981-32918120)
chr5 (323-360)||(6020393-6020430)
[»] chr6 (6 HSPs)
chr6 (207-360)||(19256700-19256853)
chr6 (212-360)||(33629752-33629900)
chr6 (212-360)||(1682701-1682849)
chr6 (212-278)||(15673562-15673628)
chr6 (212-278)||(23347803-23347869)
chr6 (235-275)||(31297504-31297544)
[»] chr7 (8 HSPs)
chr7 (221-360)||(43104966-43105105)
chr7 (207-360)||(12379057-12379210)
chr7 (212-360)||(46623359-46623507)
chr7 (212-360)||(15654042-15654190)
chr7 (298-360)||(13775858-13775920)
chr7 (212-278)||(28327093-28327159)
chr7 (212-360)||(3104558-3104706)
chr7 (319-360)||(21277495-21277536)
[»] chr2 (6 HSPs)
chr2 (227-359)||(26180277-26180409)
chr2 (212-360)||(31085974-31086122)
chr2 (212-360)||(45421173-45421321)
chr2 (220-360)||(31774339-31774479)
chr2 (212-350)||(13549789-13549927)
chr2 (235-275)||(8066586-8066626)
[»] scaffold0418 (1 HSPs)
scaffold0418 (212-360)||(7330-7478)
[»] chr4 (6 HSPs)
chr4 (212-360)||(7663575-7663723)
chr4 (316-360)||(25875131-25875175)
chr4 (212-338)||(23279284-23279410)
chr4 (212-360)||(3130316-3130464)
chr4 (220-356)||(8655418-8655554)
chr4 (216-274)||(53809582-53809640)
[»] chr1 (6 HSPs)
chr1 (212-360)||(36928822-36928970)
chr1 (212-360)||(36305439-36305587)
chr1 (212-359)||(4644669-4644816)
chr1 (235-332)||(41061504-41061601)
chr1 (212-360)||(14365962-14366110)
chr1 (235-332)||(26720382-26720479)
[»] scaffold0029 (1 HSPs)
scaffold0029 (214-356)||(134975-135117)
[»] scaffold0002 (2 HSPs)
scaffold0002 (214-356)||(312802-312944)
scaffold0002 (214-356)||(328256-328398)
[»] chr8 (4 HSPs)
chr8 (235-332)||(26031175-26031272)
chr8 (212-360)||(7452007-7452155)
chr8 (298-360)||(28542658-28542720)
chr8 (210-279)||(9424994-9425063)
[»] scaffold0197 (1 HSPs)
scaffold0197 (319-360)||(12314-12355)
[»] scaffold0179 (1 HSPs)
scaffold0179 (235-332)||(7211-7308)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 100 - 360
Target Start/End: Complemental strand, 24227729 - 24227470
Alignment:
Q  100 ttaaattaaatttaaggacaaataagatatataaatcatttatatatcgtcgacactaataacacttctgattatttattgtagtttactgttttgacag 199  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||     
T  24227729 ttaaattaaatctaaggacaaataagatatataaatcatttatatatcgttgacactaataacatttctgattatttattgcagtttactgttttgacaa 24227630  T
Q  200 tggcaaataaaactagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgt 299  Q
     ||||||||||||||||||| |||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24227629 gggcaaataaaactagacgccctttcatgcaactcatttgg-ttctgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgt 24227531  T
Q  300 tactcccattctcagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24227530 tactcccattcccagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 24227470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 358
Target Start/End: Original strand, 28675261 - 28675412
Alignment:
Q  207 taaaactagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactccc 306  Q
    |||| ||||||| ||||| |||||||||||||||||| ||||||  || ||||| || ||| |||| ||||||||||| ||||  ||| |||||||||||    
T  28675261 taaagctagacgttcttttatgcaactcatttgacttctgtgtgtctgtgttgtgtggaattaacgaaataatcgcctatttaataatgttgttactccc 28675360  T
Q  307 attctcagcttattagacaaagttaagatgttgtcgttaggttggttgaaag 358  Q
    ||||   | || |||||||| |||||||||||||| ||||| ||||||||||    
T  28675361 attcctcgattgttagacaaggttaagatgttgtctttaggctggttgaaag 28675412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 212 - 360
Target Start/End: Original strand, 30167682 - 30167830
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| |||||||| || || ||| | ||||| |||||||| || |||||||| |||||||| || ||||  ||| |  | |||| |||||     
T  30167682 ctagacgttcttttatgcaacttatatggcttctttgtgcatgggttgtgtggaatgaacgcaataatcgtctgtttaataatgtaataactctcattcc 30167781  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    | | || ||||||||||||||||||||||| ||||||||||||||||||    
T  30167782 ccgtttgttagacaaagttaagatgttgtccttaggttggttgaaagct 30167830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 351
Target Start/End: Complemental strand, 9378892 - 9378761
Alignment:
Q  220 tctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattctcagcttat 319  Q
    ||||| ||||||||||| |||||| ||||||| |||||||| || |||||| | ||  |||| || ||||  ||| ||||||||||||| | | | ||||    
T  9378892 tcttttatgcaactcatatgacttctgtgtgcctgggttgtttggaatgaatgaaactatcgtctgtttaataatgttgttactcccatcccccgtttat 9378793  T
Q  320 tagacaaagttaagatgttgtcgttaggttgg 351  Q
    ||||||| |||||||||||||| |||||||||    
T  9378792 tagacaaggttaagatgttgtctttaggttgg 9378761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 6176815 - 6176881
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataa 278  Q
    ||||||| ||||| |||||||| || || ||||| ||||| |||||||| || ||||||||||||||    
T  6176815 ctagacgttcttttatgcaactaatatggcttttatgtgcctgggttgtttggaatgaacgtaataa 6176881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 15484126 - 15484183
Alignment:
Q  218 gctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaa 275  Q
    |||| |||||||| || ||||| ||||||||| |||||||||| || |||||||||||    
T  15484126 gctcgttcatgcagcttatttggcttttgtgttcttgggttgtgtggaatgaacgtaa 15484183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 360
Target Start/End: Complemental strand, 13448281 - 13448133
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| |||||||| ||||| ||| | ||||| || ||||| || |||||||| |||||||| || ||||  ||| |  | |||||||||      
T  13448281 ctagacgttcttttatgcaacttatttggcttctctgtgcctgagttgtgtggaatgaacgaaataatcgtctgtttaataatgtaataactcccatttc 13448182  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    | |||| |||| ||| || ||  ||||||| |||| |||||||||||||    
T  13448181 ccgcttgttaggcaaggtcaaattgttgtccttagcttggttgaaagct 13448133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 36708673 - 36708621
Alignment:
Q  223 ttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaa 275  Q
    ||||||||||| ||||| ||||||||| ||||||| || || |||||||||||    
T  36708673 ttcatgcaacttatttggcttttgtgttcttgggtagtgtggaatgaacgtaa 36708621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 360
Target Start/End: Original strand, 49732270 - 49732418
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| |||||||| ||||| ||| | |||||  ||||||| || || || || |||||||| || ||||  ||| |  | |||| |||||     
T  49732270 ctagacgttcttttatgcaacttatttggcttctctgtgcccgggttgtgtggaacgagcgaaataatcgtctgtttaataatgtaataactctcattcc 49732369  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    | | || |||||||| || ||||||||||| |||| |||||||||||||    
T  49732370 ccgtttgttagacaaggtcaagatgttgtccttagcttggttgaaagct 49732418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 7e-68; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 151 - 357
Target Start/End: Complemental strand, 587380 - 587174
Alignment:
Q  151 gacactaataacacttctgattatttattgtagtttactgttttgacagtggcaaataaaactagacgctctttcatgcaactcatttgacttttgtgtg 250  Q
    ||||||||||||| || | || |||||||| |||||||| ||||||||| ||||| |||| |||||||||||||||||||||||||||| ||||||||||    
T  587380 gacactaataacatttataatcatttattgcagtttactcttttgacagaggcaagtaaagctagacgctctttcatgcaactcatttggcttttgtgtg 587281  T
Q  251 cttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattctcagcttattagacaaagttaagatgttgtcgttaggttg 350  Q
    |||| |||||||| || ||||||||||||||||||||||||||| |||||||||||||||    ||||||||||||||||||||||||||| ||||||||    
T  587280 cttgagttgtatggaacgaacgtaataatcgcctctttagaaatgttgttactcccattcctctcttattagacaaagttaagatgttgtcattaggttg 587181  T
Q  351 gttgaaa 357  Q
    |||||||    
T  587180 gttgaaa 587174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 212 - 360
Target Start/End: Original strand, 10487243 - 10487391
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| |||||||| ||||| ||| | ||||| |||||||| || ||||| || |||||||| || ||||  ||| |  | ||| |||||||    
T  10487243 ctagacgttcttttatgcaacttatttggcttctttgtgcctgggttgtgtggaatgagcgaaataatcgtctgtttaataatgtaataacttccattct 10487342  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    | | || ||||| || || ||||||||||| |||| |||||||||||||    
T  10487343 ccgtttgttagataaggtcaagatgttgtccttagcttggttgaaagct 10487391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 29094854 - 29094909
Alignment:
Q  223 ttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataa 278  Q
    ||||||| ||| ||||| ||||||||| |||||||| |||| ||||||||||||||    
T  29094854 ttcatgcgacttatttggcttttgtgttcttgggttatatggaatgaacgtaataa 29094909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 351
Target Start/End: Complemental strand, 32918120 - 32917981
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| |||||||| ||||| ||| | ||||| |||||||| || |||||||| ||||| || || ||||   || ||||||| ||||| |     
T  32918120 ctagacggtcttttatgcaactaatttggcttctatgtgcctgggttgtttggaatgaacgaaataaccgtctgtttaatcatgttgttacccccatccc 32918021  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttgg 351  Q
      | |||||||| ||  ||||||||||||| |||||||||    
T  32918020 ttgtttattagataagattaagatgttgtctttaggttgg 32917981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 6020430 - 6020393
Alignment:
Q  323 acaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  6020430 acaaagttaagatgttgtctttaggttggctgaaagct 6020393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 207 - 360
Target Start/End: Complemental strand, 19256853 - 19256700
Alignment:
Q  207 taaaactagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactccc 306  Q
    |||| ||||||||||||| |||||||||||||| ||| ||||||  | |||||| || |||||||| |||||| |||||||||  ||| |||||||  |     
T  19256853 taaagctagacgctcttttatgcaactcatttggcttctgtgtgtctaggttgtttggaatgaacgaaataattgcctctttaataatgttgttacgtct 19256754  T
Q  307 attctcagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    |||| | | ||||||||||| ||||| |||||||| ||||| ||||||||||||    
T  19256753 attccccgtttattagacaaggttaatatgttgtctttaggatggttgaaagct 19256700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 360
Target Start/End: Complemental strand, 33629900 - 33629752
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| |||||||| ||||| ||| | ||||| |||||||| || ||| |||| ||||||||||| ||||  |||||  | ||||||||||     
T  33629900 ctagacgttcttttatgcaacttatttggcttctctgtgcctgggttgtgtggaattaacgaaataatcgcctgtttaataatataataactcccattcc 33629801  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    | | || |||||||| || ||  ||||||| |||| |||||||||||||    
T  33629800 ccgtttgttagacaaggtcaaattgttgtccttagcttggttgaaagct 33629752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 360
Target Start/End: Complemental strand, 1682849 - 1682701
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| |||||||| ||||| ||| | ||||| |||||||| || |||||||| |||||||| || ||||  ||| |  | |||| |||||     
T  1682849 ctagacgttcttttatgcaacttatttggcttctctgtgcctgggttgtgtggaatgaacgaaataatcgtctgtttaataatgtaataactctcattcc 1682750  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    | | || |||||||| || ||  ||||||| |||| |||||||||||||    
T  1682749 ccgtttgttagacaaggtcaaattgttgtccttagcttggttgaaagct 1682701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 15673628 - 15673562
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataa 278  Q
    ||||||| ||||| |||||||| ||||| ||| | ||||| |||||||| || ||||||||||||||    
T  15673628 ctagacgttcttttatgcaactaatttggcttctatgtgcctgggttgtttggaatgaacgtaataa 15673562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 23347803 - 23347869
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataa 278  Q
    ||||||| ||||| |||||||| || || ||||| ||||| |||||||| || ||||||||||||||    
T  23347803 ctagacgttcttttatgcaactaatatggcttttatgtgcctgggttgtttggaatgaacgtaataa 23347869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 31297504 - 31297544
Alignment:
Q  235 atttgacttttgtgtgcttgggttgtatgaaatgaacgtaa 275  Q
    ||||| ||||||||| |||||||| ||||||||||||||||    
T  31297504 atttggcttttgtgttcttgggttatatgaaatgaacgtaa 31297544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 360
Target Start/End: Complemental strand, 43105105 - 43104966
Alignment:
Q  221 ctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattctcagcttatt 320  Q
    |||| ||| |||||||||| |||||||| |||||| |||| || |||||||  || |||||||| ||||  ||| | ||||||||||||| | | |||||    
T  43105105 cttttatgtaactcatttggcttttgtgcgcttggcttgtttggaatgaacaaaacaatcgcctgtttaataatgtggttactcccattccccgtttatt 43105006  T
Q  321 agacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    |||||| ||||||||||| || ||||| ||||||||||||    
T  43105005 agacaaggttaagatgttttctttaggatggttgaaagct 43104966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 207 - 360
Target Start/End: Original strand, 12379057 - 12379210
Alignment:
Q  207 taaaactagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactccc 306  Q
    |||| ||||||| ||||| ||||||||| | || ||| ||||||| || ||||| || |||||||| |||||  |||| ||||  ||| | |||||||||    
T  12379057 taaagctagacgttcttttatgcaactcgtatggcttctgtgtgcctgcgttgtgtggaatgaacgaaataaatgcctgtttaataatgtagttactccc 12379156  T
Q  307 attctcagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    || | | | ||||||||||| |||||| ||||||| ||||||||| ||||||||    
T  12379157 atcccctgtttattagacaatgttaagttgttgtctttaggttggctgaaagct 12379210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 360
Target Start/End: Complemental strand, 46623507 - 46623359
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| |||||||| || || ||| | ||||| ||||| || ||||||||||| |||||||| || ||||  ||| |  | |||| |||||     
T  46623507 ctagacgttcttttatgcaacttatatggcttctttgtgcatgggtcgtgtgaaatgaacgaaataatcgtctgtttaataatgtaataactctcattcc 46623408  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    | | || |||||||| |||||||||||||| ||||| ||||||||||||    
T  46623407 ccgtttgttagacaaggttaagatgttgtccttaggatggttgaaagct 46623359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 212 - 360
Target Start/End: Original strand, 15654042 - 15654190
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| |||||||| || || ||| | ||||| || ||||| || |||||||| |||||||| || ||||  ||| |  | ||||||||||     
T  15654042 ctagacgttcttttatgcaacttatatggcttctttgtgcatgagttgtgtggaatgaacgaaataatcgtctgtttaataatgtaataactcccattcc 15654141  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    | | || |||||||| || ||||||||||| ||||| ||||||||||||    
T  15654142 ccgtttgttagacaaggtaaagatgttgtctttaggatggttgaaagct 15654190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 360
Target Start/End: Original strand, 13775858 - 13775920
Alignment:
Q  298 gttactcccattctcagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    ||||||||||||| | ||||||||||||| |||||||||||||  ||||| |||| |||||||    
T  13775858 gttactcccattccccgcttattagacaaggttaagatgttgtatttagggtggtcgaaagct 13775920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 28327159 - 28327093
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataa 278  Q
    ||||||| ||||| |||||||| ||||| ||| | |||||||||||||| || ||||||||||||||    
T  28327159 ctagacgttcttttatgcaacttatttggcttctttgtgcttgggttgtttggaatgaacgtaataa 28327093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 360
Target Start/End: Complemental strand, 3104706 - 3104558
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| ||||||||  | || ||| ||||||| || ||||| || |||||||| || |||||||| ||||   || || | ||||||||||     
T  3104706 ctagacgttcttttatgcaactattatgtcttatgtgtgcctgtgttgtttggaatgaacgaaacaatcgcctatttaatgatgttataactcccattcc 3104607  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
      | ||  ||||||| |||||||||||||| ||||||||| ||||||||    
T  3104606 atgtttgctagacaaggttaagatgttgtctttaggttggctgaaagct 3104558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 360
Target Start/End: Original strand, 21277495 - 21277536
Alignment:
Q  319 ttagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    |||||||| || ||||||||||| ||||||||||||||||||    
T  21277495 ttagacaaggtaaagatgttgtccttaggttggttgaaagct 21277536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 227 - 359
Target Start/End: Original strand, 26180277 - 26180409
Alignment:
Q  227 tgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattctcagcttattagacaa 326  Q
    |||||||||| || ||| ||||||| || |||||||||||| |||| ||||||||||| | ||  ||| ||||||||||||| | | | |||||||||||    
T  26180277 tgcaactcatatggcttctgtgtgcctgagttgtatgaaataaacgaaataatcgcctttataataatgttgttactcccatcccccgtttattagacaa 26180376  T
Q  327 agttaagatgttgtcgttaggttggttgaaagc 359  Q
     ||||||||| |||| ||||||| | |||||||    
T  26180377 ggttaagatgatgtctttaggttagctgaaagc 26180409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 212 - 360
Target Start/End: Original strand, 31085974 - 31086122
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| ||||||||||| || ||||||||||| |||||||| || ||| |||| ||||| ||| | ||||  ||| ||||||||||||| |     
T  31085974 ctagacgttcttttatgcaactcatatgccttttgtgtgcctgggttgtttggaattaacgaaataaccgcatgtttaataatgttgttactcccatccc 31086073  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
      | |||||||||||  |||||| |||||| ||||||| ||||||||||    
T  31086074 gtgtttattagacaagattaagacgttgtctttaggttagttgaaagct 31086122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 360
Target Start/End: Complemental strand, 45421321 - 45421173
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| |||||||| || || ||| | ||||| |||||||| || |||||||| |||||||| || ||||  ||| |  | |||| |||||     
T  45421321 ctagacgttcttttatgcaacttatatggcttctttgtgcatgggttgtgtggaatgaacgcaataatcgtctgtttaataatgtaataactcacattcc 45421222  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
      | || ||||||||||||||||||||||| ||||||||||||||||||    
T  45421221 acgtttgttagacaaagttaagatgttgtccttaggttggttgaaagct 45421173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 360
Target Start/End: Complemental strand, 31774479 - 31774339
Alignment:
Q  220 tctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattctcagcttat 319  Q
    ||||||||||||||||| |||||| | |||||||| ||||| || |||||  | |||| |||| | |||| |||| || |||||||||||| | | ||      
T  31774479 tctttcatgcaactcatctgacttctttgtgcttgagttgtgtggaatgagggcaatagtcgcttgtttaaaaatgttattactcccattccctgtttgc 31774380  T
Q  320 tagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    | || || |||||||||||||| ||||| | | ||||||||    
T  31774379 ttgataaggttaagatgttgtctttaggattgctgaaagct 31774339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 350
Target Start/End: Complemental strand, 13549927 - 13549789
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| |||||||| ||||| ||| | ||||| |||||||| || |||||||| ||||| || || ||||   || ||||||| ||||| |     
T  13549927 ctagacgttcttttatgcaacttatttggcttctttgtgcctgggttgtgtggaatgaacgaaataaccgtctgtttaatcatgttgttacccccatccc 13549828  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttg 350  Q
      | |||||||| ||  ||||||||||||| ||||||||    
T  13549827 ttgtttattagataagattaagatgttgtctttaggttg 13549789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 8066586 - 8066626
Alignment:
Q  235 atttgacttttgtgtgcttgggttgtatgaaatgaacgtaa 275  Q
    ||||||||||||||| |||||||| |||| |||||||||||    
T  8066586 atttgacttttgtgttcttgggttatatggaatgaacgtaa 8066626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 360
Target Start/End: Complemental strand, 7478 - 7330
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| |||||||| || || ||| | ||||| |||||||| || |||||||| |||||||| || ||||  ||| |  | |||| |||||     
T  7478 ctagacgttcttttatgcaacttatatggcttctttgtgcatgggttgtgtggaatgaacgcaataatcgtctgtttaataatgtaataactctcattcc 7379  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    | | || |||||||| |||||||||||||| ||||||||||||||||||    
T  7378 ccgtttgttagacaaggttaagatgttgtccttaggttggttgaaagct 7330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 360
Target Start/End: Original strand, 7663575 - 7663723
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| |||||||| || || ||| | ||||| |||||||| || |||||||| |||||||| || ||||  ||| |  | |||| |||||     
T  7663575 ctagacgttcttttatgcaacttatatggcttctttgtgcatgggttgtgtggaatgaacgcaataatcgtctgtttaataatgtaataactctcattcc 7663674  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    | | || |||||||| |||||||||||||| ||||||||||||||||||    
T  7663675 ccgtttgttagacaaggttaagatgttgtccttaggttggttgaaagct 7663723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 25875131 - 25875175
Alignment:
Q  316 ttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||    
T  25875131 ttattagacaaggttaagatgttgtctttaggttggttgaaagct 25875175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 338
Target Start/End: Complemental strand, 23279410 - 23279284
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||| ||||||| |||||||| || || ||| | ||||  |||||||| || || ||||| |||||||| || ||||  ||| ||||||||||||| |     
T  23279410 ctagatgctcttttatgcaacttatatggcttctttgtgtgtgggttgtgtggaacgaacgaaataatcgtctgtttaataatgttgttactcccatccc 23279311  T
Q  312 cagcttattagacaaagttaagatgtt 338  Q
    | | ||||||||||| |||||||||||    
T  23279310 ccgtttattagacaaggttaagatgtt 23279284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 360
Target Start/End: Original strand, 3130316 - 3130464
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| |||||||| ||||| ||| | ||||| |||||||| || |||||||  |||||||| || ||||  ||| |  | |||| |||||     
T  3130316 ctagacgttcttttatgcaacttatttggcttctttgtgcctgggttgtgtggaatgaacaaaataatcgtctgtttaataatgtaataactctcattcc 3130415  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    | |||| |||||||| || ||  ||||||| |||| |||||||||||||    
T  3130416 ccgcttgttagacaaggtcaaattgttgtccttagcttggttgaaagct 3130464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 356
Target Start/End: Original strand, 8655418 - 8655554
Alignment:
Q  220 tctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattctcagcttat 319  Q
    ||||| |||||||| ||||| ||| | ||||| |||||||| || ||||| || ||||||||||| ||||  ||| |  | |||||||||| | | || |    
T  8655418 tcttttatgcaacttatttggcttctctgtgcctgggttgtgtggaatgagcgaaataatcgcctgtttaataatgtaataactcccattccccgtttgt 8655517  T
Q  320 tagacaaagttaagatgttgtcgttaggttggttgaa 356  Q
    |||| || || ||||||||||| |||| |||||||||    
T  8655518 tagataaggtcaagatgttgtccttagcttggttgaa 8655554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 53809640 - 53809582
Alignment:
Q  216 acgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgta 274  Q
    |||||| ||||||||||| ||||| || |||||| |||||||||| || ||||||||||    
T  53809640 acgctcgttcatgcaacttatttggctattgtgtacttgggttgtgtggaatgaacgta 53809582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 360
Target Start/End: Complemental strand, 36928970 - 36928822
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| |||||||| ||||| ||  | |||||||||||||| || |||||||| |||||||| || ||||  ||| || | |||||||| |     
T  36928970 ctagacgttcttttatgcaacttatttggctactttgtgcttgggttgtgtggaatgaacgaaataatcgtctgtttaataatgttataactcccatccc 36928871  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
      | || |||||||| || ||||||||||| ||||||||||||||||||    
T  36928870 tcgtttgttagacaaggtaaagatgttgtccttaggttggttgaaagct 36928822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 360
Target Start/End: Complemental strand, 36305587 - 36305439
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| |||||||| || || ||  | ||||  |||||||| || |||||||| |||||||| || ||||  ||| |  | |||||||||||    
T  36305587 ctagacgttcttttatgcaacttatatggctactttgtgtctgggttgtgtggaatgaacgaaataatcgtctgtttaataatgtaataactcccattct 36305488  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    | | || |||||||| || ||||||||||| ||||||||||||||||||    
T  36305487 ccgtttgttagacaaggtaaagatgttgtccttaggttggttgaaagct 36305439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 359
Target Start/End: Complemental strand, 4644816 - 4644669
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| ||||||||  |||| ||| | ||||| |||||||| || |||||||| |||||||  || ||||  ||| |  | ||| ||||||     
T  4644816 ctagacgttcttttatgcaacttgtttggcttctctgtgcctgggttgtgtggaatgaacgaaataatcatctgtttaataatgtaataacttccattcc 4644717  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttggttgaaagc 359  Q
    ||| || |||||||| || ||||||||||| |||||||||||||||||    
T  4644716 cagtttgttagacaaggtcaagatgttgtccttaggttggttgaaagc 4644669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 332
Target Start/End: Original strand, 41061504 - 41061601
Alignment:
Q  235 atttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattctcagcttattagacaaagttaa 332  Q
    |||||||||||||||| ||||||| |||| ||||||||||||||  | ||||| |  ||| |||||||| | |||||||| || ||||| ||||||||    
T  41061504 atttgacttttgtgtgtttgggttttatggaatgaacgtaataacagactcttcaataatgttgttacttctattctcaggttgttagataaagttaa 41061601  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 212 - 360
Target Start/End: Original strand, 14365962 - 14366110
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| |||||||| ||||  ||| | |||||||||||||| || ||||| || |||||||| || ||||  ||| |  | |||| |||||     
T  14365962 ctagacgttcttttatgcaacttatttagcttctctgtgcttgggttgtgtggaatgagcgaaataatcgtctgtttaataatgtaataactctcattcc 14366061  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    | | || |||||||| || ||||||||||| |||| |||||||||||||    
T  14366062 ccgtttgttagacaaggtcaagatgttgtccttagcttggttgaaagct 14366110  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 332
Target Start/End: Complemental strand, 26720479 - 26720382
Alignment:
Q  235 atttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattctcagcttattagacaaagttaa 332  Q
    ||||| |||||||||| ||||||| |||| ||||||||||||||  | ||||| |  ||| |||||||| | |||| ||| || ||||| ||||||||    
T  26720479 atttggcttttgtgtgtttgggttttatggaatgaacgtaataacagactcttcaataatgttgttacttctattcccaggttgttagataaagttaa 26720382  T

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Target: scaffold0029 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 356
Target Start/End: Original strand, 134975 - 135117
Alignment:
Q  214 agacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattctca 313  Q
    ||||| ||||| |||||||| ||||| ||| | |||||||||||||| |  ||||| || ||||||||||| ||||  ||| |  | |||||||||| |     
T  134975 agacgttcttttatgcaacttatttggcttctctgtgcttgggttgtgtcgaatgagcgaaataatcgcctgtttaataatgtaataactcccattcccc 135074  T
Q  314 gcttattagacaaagttaagatgttgtcgttaggttggttgaa 356  Q
    | || ||||| || || ||||||||||| |||| |||||||||    
T  135075 gtttgttagataaggtcaagatgttgtccttagcttggttgaa 135117  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 356
Target Start/End: Original strand, 312802 - 312944
Alignment:
Q  214 agacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattctca 313  Q
    ||||| ||||| |||||||| ||||| ||| | |||||||||||||| |  ||||| || ||||||||||| ||||  ||| |  | |||||||||| |     
T  312802 agacgttcttttatgcaacttatttggcttctctgtgcttgggttgtgtcgaatgagcgaaataatcgcctgtttaataatgtaataactcccattcccc 312901  T
Q  314 gcttattagacaaagttaagatgttgtcgttaggttggttgaa 356  Q
    | || ||||| || || ||||||||||| |||| |||||||||    
T  312902 gtttgttagataaggtcaagatgttgtccttagcttggttgaa 312944  T

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Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 356
Target Start/End: Original strand, 328256 - 328398
Alignment:
Q  214 agacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattctca 313  Q
    ||||| ||||| |||||||| ||||| ||| | |||||||||||||| |  ||||| || ||||||||||| ||||  ||| |  | |||||||||| |     
T  328256 agacgttcttttatgcaacttatttggcttctctgtgcttgggttgtgtcgaatgagcgaaataatcgcctgtttaataatgtaataactcccattcccc 328355  T
Q  314 gcttattagacaaagttaagatgttgtcgttaggttggttgaa 356  Q
    | || ||||| || || ||||||||||| |||| |||||||||    
T  328356 gtttgttagataaggtcaagatgttgtccttagcttggttgaa 328398  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 332
Target Start/End: Complemental strand, 26031272 - 26031175
Alignment:
Q  235 atttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattctcagcttattagacaaagttaa 332  Q
    |||||||||||||||| ||| ||| |||| ||||||||||||||  | |||||||  ||| |||||||| | |||| ||| || ||||| ||||||||    
T  26031272 atttgacttttgtgtgtttgagttttatggaatgaacgtaataacagactctttaataatgttgttacttctattcccaggttgttagataaagttaa 26031175  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 360
Target Start/End: Complemental strand, 7452155 - 7452007
Alignment:
Q  212 ctagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattct 311  Q
    ||||||| ||||| |||||||| || || ||  | ||||  |||||||| || |||||||  |||||||| || ||||  ||| || | |||||||| |     
T  7452155 ctagacgttcttttatgcaacttatatggctactttgtgactgggttgtgtggaatgaacaaaataatcgtctgtttaataatgttataactcccatccc 7452056  T
Q  312 cagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    | | || |||||||| || ||||||||||| ||||||||||||||||||    
T  7452055 ccgtttgttagacaaggtaaagatgttgtccttaggttggttgaaagct 7452007  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 360
Target Start/End: Complemental strand, 28542720 - 28542658
Alignment:
Q  298 gttactcccattctcagcttattagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    ||||||| ||||| | | ||||||||||| |||| ||||||||| ||||| ||||||||||||    
T  28542720 gttactctcattccccgtttattagacaaggttacgatgttgtctttaggatggttgaaagct 28542658  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 279
Target Start/End: Complemental strand, 9425063 - 9424994
Alignment:
Q  210 aactagacgctctttcatgcaactcatttgacttttgtgtgcttgggttgtatgaaatgaacgtaataat 279  Q
    ||||||| ||||||| ||||||||| |||| ||| | |||| |||||| ||||| || ||||||||||||    
T  9425063 aactagaagctcttttatgcaactcgtttggcttgtatgtgtttgggtggtatggaacgaacgtaataat 9424994  T

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Target: scaffold0197 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 360
Target Start/End: Original strand, 12314 - 12355
Alignment:
Q  319 ttagacaaagttaagatgttgtcgttaggttggttgaaagct 360  Q
    |||||||| || ||||||||||| ||||||||||||||||||    
T  12314 ttagacaaggtaaagatgttgtccttaggttggttgaaagct 12355  T

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Target: scaffold0179 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 332
Target Start/End: Complemental strand, 7308 - 7211
Alignment:
Q  235 atttgacttttgtgtgcttgggttgtatgaaatgaacgtaataatcgcctctttagaaatattgttactcccattctcagcttattagacaaagttaa 332  Q
    ||||| |||||||||| ||||||| |||| ||||||||||||||  | ||||| |  ||| |||||||| | |||| ||| || ||||| ||||||||    
T  7308 atttggcttttgtgtgtttgggttttatggaatgaacgtaataacagactcttcaataatgttgttacttctattcccaggttgttagataaagttaa 7211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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