View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5781_low_21 (Length: 347)
Name: NF5781_low_21
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 3450884 - 3451205
Alignment:
| Q |
8 |
aatattcatagggataataaatgaatgacagcatctattcattcagttttgcttggtcttctcttcattctgctataaggaccaactgttctgtccataa |
107 |
Q |
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| T |
3450884 |
aatattcatagggataataaatgaatgacagcatctattcattcagttttgcttggctttctcttcattctgctataaggtccaattgttctgtccgtaa |
3450983 |
T |
|
| Q |
108 |
tatacatgtaaataacctgactccatgatttatagtgtgacaaactatcataatattctggtgcaatctccttcaccttgtgaagtttgtttccaggaat |
207 |
Q |
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| T |
3450984 |
tatacatgtaaataacctgactccatgatttatagtgtgacaaactatcataatattctggtgcaatctccttcaccttgtgaagtttgtttccaggaat |
3451083 |
T |
|
| Q |
208 |
tcttggaaaatcatggtgctcgttgtggtaacctacatgccatgtgagaagattcagaggtccgtagtaagaatatgtctcttgttcaggattgaataca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3451084 |
tcttggaaaatcatggtgctcgttgtggtaacctacatgccatgtgagaagattcagaggtccatagtaagaatatgtctcttgttcaggattgaataca |
3451183 |
T |
|
| Q |
308 |
taatgttctgaaatgaagtgac |
329 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
3451184 |
taatgttctgaaatgaagtgac |
3451205 |
T |
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