View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5781_low_22 (Length: 319)
Name: NF5781_low_22
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 34142784 - 34142479
Alignment:
| Q |
1 |
taggagttgaagcaaagaggtttgaagaattcttcatcaaagatcaaactagctttcttagacttaaccattatcctccatgcccttaccctcaccttgc |
100 |
Q |
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| T |
34142784 |
taggagttgaagcaaagaggtttgaagaattcttcatcaaagatcaaactagctttcttagacttaaccattatcctccatgcccttaccctcaccttgc |
34142685 |
T |
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| Q |
101 |
tcttggtgctggtccacataaggattctggtgccttaactattcttgcccaagatgaggttggaggacttgaagtgaagcggaaaacagatcaacagtgg |
200 |
Q |
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| T |
34142684 |
tcttggtgctggtccacataaggattctggtgccttaactattcttgcccaagatgaggttggaggacttgaagtgaagcggaaaacagatcaacagtgg |
34142585 |
T |
|
| Q |
201 |
g-tcttgtgaaacccacaccagatgcttatattattaatgttggtgatgtcattcaggtaccaaaacattatagttttatggacttttgacctaataaat |
299 |
Q |
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| T |
34142584 |
gttcttgtgaaacccacaccagatgcttatattattaatgttggtgatgtcattcaggtacc-aaacattatagttttatggacttttgacctaataaat |
34142486 |
T |
|
| Q |
300 |
gttgtct |
306 |
Q |
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||||||| |
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| T |
34142485 |
gttgtct |
34142479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 34131286 - 34131029
Alignment:
| Q |
1 |
taggagttgaagcaaagaggtttgaagaattcttcatcaaagatcaaactagctttcttagacttaaccattatcctccatgcccttaccctcaccttgc |
100 |
Q |
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| T |
34131286 |
taggacttgaagcaaagaggtttgaagaattcttca---agtatcaaactagctttattagattcaaccactatcctccatgcccttaccctcacctagc |
34131190 |
T |
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| Q |
101 |
tcttggtgctggtccacataaggattctggtgccttaactattcttgcccaagatgaggttggaggacttgaagtgaagcggaaaacagatcaacagtgg |
200 |
Q |
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| T |
34131189 |
acttggagttggacgacacaaggatgctggtgccttaactattcttgcccaagatgaggttggaggacttgaagtgaagcgtaaatcagaccaacaatgg |
34131090 |
T |
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| Q |
201 |
g-tcttgtgaaacccacaccagatgcttatattattaatgttggtgatgtcattcaggtac |
260 |
Q |
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| T |
34131089 |
gttcttgtgaaacctaccccagatgcttacattatcaatgttggtgatatcattcaggtac |
34131029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 34136977 - 34136720
Alignment:
| Q |
1 |
taggagttgaagcaaagaggtttgaagaattcttcatcaaagatcaaactagctttcttagacttaaccattatcctccatgcccttaccctcaccttgc |
100 |
Q |
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|
|||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| ||||| | ||||| |||||||||||||||||||||||||| || |
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| T |
34136977 |
taggagttgaagcaaagaggtttgaagagttcttca---aagatcacactagctttattagattcaaccactatcctccatgcccttaccctcacctagc |
34136881 |
T |
|
| Q |
101 |
tcttggtgctggtccacataaggattctggtgccttaactattcttgcccaagatgaggttggaggacttgaagtgaagcggaaaacagatcaacagtgg |
200 |
Q |
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||| || | ||| | ||| |||||| ||||||||||||||||||||||||||||||| ||||| || ||||||||||||| ||| || ||| ||||| |
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| T |
34136880 |
tctcggcgttgggcgacacaaggatgctggtgccttaactattcttgcccaagatgatgttgggggtcttgaagtgaagcacaaagcatcacaagagtgg |
34136781 |
T |
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| Q |
201 |
g-tcttgtgaaacccacaccagatgcttatattattaatgttggtgatgtcattcaggtac |
260 |
Q |
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| T |
34136780 |
gttcttgtgaaacctacctcagatgcttacattatcaacgtttgtgatattatccaggtac |
34136720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 34140135 - 34139943
Alignment:
| Q |
1 |
taggagttgaagcaaagaggtttgaagaattcttcatcaaagatcaaactagctttcttagacttaaccattatcctccatgcccttaccctcaccttgc |
100 |
Q |
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||||| |||||||||||||||||||||||||||||| | |||||||||||||| | ||| | ||| | |||||||||||||||||||||||||| || |
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| T |
34140135 |
taggacttgaagcaaagaggtttgaagaattcttca---agtatcaaactagctttataagattcaactactatcctccatgcccttaccctcacctagc |
34140039 |
T |
|
| Q |
101 |
tcttggtgctggtccacataaggattctggtgccttaactattcttgcccaagatgaggttggaggacttgaagtgaagcggaaaacagatcaaca |
196 |
Q |
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| T |
34140038 |
tcttggccttggaagacacaaggatgctggtgccttgactattcttaccctaaatgaggttgaaggtcttgaagtgaagcgtaaaacagatcaaca |
34139943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 34126028 - 34125968
Alignment:
| Q |
120 |
aaggattctggtgccttaactattcttgcccaagatgaggttggaggacttgaagtgaagc |
180 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
34126028 |
aaggatgctggtgccttaactattcttgcccaagatgaggttgctggtcttgaagtgaagc |
34125968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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