View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5781_low_23 (Length: 311)
Name: NF5781_low_23
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 45 - 295
Target Start/End: Complemental strand, 39688257 - 39688006
Alignment:
| Q |
45 |
acgatgacgaattcattcgaacctactttaccaattgagttaaaatcacggg-acaataaaaacatgattgataaaaggttacacatgtcgtttaaataa |
143 |
Q |
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| T |
39688257 |
acgatgacgaattcattcgaacctactttaccaattgagttaaaatcacggggacaataaaaacatgattgataaaaggttacacatgtcgtttaaataa |
39688158 |
T |
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| Q |
144 |
ttaaaattaacctaatataaattgattttgttatcttctagtgaaactcactcactaactgatgggaagggaaaaatttacacctgcaaattaaatgtct |
243 |
Q |
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| T |
39688157 |
ttaaaattaacctaatataaattgattttgttatcttctagtgaaactcactcactaactgatgggaagggaaaaatttacacctgcaaattaaatgtct |
39688058 |
T |
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| Q |
244 |
ttgcaatctttcactaagtaatcaactttgttggatgtactcataaccttat |
295 |
Q |
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| T |
39688057 |
ttgcaatctttcactaagtaatcaactttgttggatgtattcataaccttat |
39688006 |
T |
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