View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5781_low_33 (Length: 243)
Name: NF5781_low_33
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 46771017 - 46770817
Alignment:
| Q |
1 |
ccaagtcctcgttgttgtgatgtgtcaagtgtaaggtaaatttccaaattgaatgaaagagttgggattgaacaacatataagtgagatgacccgt-aat |
99 |
Q |
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| T |
46771017 |
ccaagtcctcgttgttgtgatgtgtcaagtgtaaggtaaatttccaaattgaatgaaagagttgggattgaacaacatataagtgagatgacccgtaaat |
46770918 |
T |
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| Q |
100 |
tcatttcttaaggttttgtgtgaagaagataaggtgtccaatatcactgtttggttgttcttagttcaatgtgatgatccaacgcagtgagactccccat |
199 |
Q |
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| T |
46770917 |
tcatttcttaaggttttgtgt---gaagataaggtgtccaatatcactgtttggttgttcttagttcaatgtg---------cgcagtgagactccccat |
46770830 |
T |
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| Q |
200 |
catggaccaacac |
212 |
Q |
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| T |
46770829 |
catggaccaacac |
46770817 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 3809057 - 3808991
Alignment:
| Q |
13 |
tgttgtgatgtgtcaagtgtaaggtaaatttccaaattgaatgaaagagttgggattgaacaacata |
79 |
Q |
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| T |
3809057 |
tgttatgatttgtcaagtgtgagttaaagttccaaattagatgaaagagttgaggttgaacaacata |
3808991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 97
Target Start/End: Complemental strand, 15342325 - 15342296
Alignment:
| Q |
68 |
ttgaacaacatataagtgagatgacccgta |
97 |
Q |
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| T |
15342325 |
ttgaacaacatataagtgagatgacccgta |
15342296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 97
Target Start/End: Complemental strand, 15431390 - 15431361
Alignment:
| Q |
68 |
ttgaacaacatataagtgagatgacccgta |
97 |
Q |
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| T |
15431390 |
ttgaacaacatataagtgagatgacccgta |
15431361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 97
Target Start/End: Complemental strand, 15522694 - 15522665
Alignment:
| Q |
68 |
ttgaacaacatataagtgagatgacccgta |
97 |
Q |
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| T |
15522694 |
ttgaacaacatataagtgagatgacccgta |
15522665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 1454639 - 1454603
Alignment:
| Q |
160 |
ttagttcaatgtgatgatccaacgcagtgagactccc |
196 |
Q |
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| T |
1454639 |
ttagctcaatgtgatgattcaacgcagtgagactccc |
1454603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 29977429 - 29977357
Alignment:
| Q |
20 |
atgtgtcaagtgtaaggtaaatttccaaattgaatgaaagagttgggattgaacaacatataagtgagatgac |
92 |
Q |
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| T |
29977429 |
atgtgtcaagtgtaagttaaagttccacattgaatgcaagagtggatgttgataaacatataagtgatatgac |
29977357 |
T |
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