View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5781_low_34 (Length: 238)
Name: NF5781_low_34
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 31 - 222
Target Start/End: Complemental strand, 37863936 - 37863745
Alignment:
| Q |
31 |
gaaaattaggctcgcctccccaaaacaacacaaacaccttctctagttttgtactagacactaacctccactaagttattctataatagacaaacacatc |
130 |
Q |
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| T |
37863936 |
gaaaattaggctcgcccgcccaaaacaacacaaacaccttctctagttttgtactagacactaacctccactaagttattctataatagacaaacacatc |
37863837 |
T |
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| Q |
131 |
ccttaacacaattattattctgttaatttcttttcttccctatttccattttccatcgtttgtgacatggagtttcgcttcagagttgttgc |
222 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37863836 |
ccttaacaccattattattctgttaatttcttttcttccctatttccattttccatcgtttgtgacatggagtttcgcttcagagttgttgc |
37863745 |
T |
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