View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5781_low_7 (Length: 538)
Name: NF5781_low_7
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781_low_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 33 - 538
Target Start/End: Original strand, 47621504 - 47622006
Alignment:
| Q |
33 |
aggatttattgcagtaaagttattttgaggnnnnnnntatatatcannnnnnnatgaagaaaatttagagtgaggggtttgttctcccatcaaagaaatt |
132 |
Q |
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| T |
47621504 |
aggatttattacagtaaagttattttgaggaaaaaa-tatatatcatttttttatgaagaaaatttagcgtgaggggtttgttctcccatcaaagaaatt |
47621602 |
T |
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| Q |
133 |
tatatttactcctctagagatagtatcatcannnnnnnnnnngacaacatgatactctgaagtaaaaacactccttaaattggacgtgtcctgacaccag |
232 |
Q |
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| T |
47621603 |
tatatttactcctctagggatagtatcatcatttttttgtt-gacaacatgataatgtgaagtaaaaacactccttaaattggacgtgtcctgacaccag |
47621701 |
T |
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| Q |
233 |
acatgcatcggtaactaacattgacatatttaattacattgaattatctttatctatttcggtgtcggcatgtcagtgtattgcatgtccgtgttcgtgt |
332 |
Q |
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| T |
47621702 |
acatgtatcggtagctaacattgacatatttaattatattgaattatctttatctatttcggtgtcggcgtgtcagtgtgttgcatgttcgtgttcgtgt |
47621801 |
T |
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| Q |
333 |
acgttcctgtgcttcatttgcatcatatcatcgtttgataatgtattactgtcattcttttattagatccttgatataatccgagtcaggtaaagaggat |
432 |
Q |
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| T |
47621802 |
acgttcctgtacttcatttgcattatatcatcgtttgaaaatgtattactgtcattcttttattagatccttgatataatccgagtcaggtaaagaggat |
47621901 |
T |
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| Q |
433 |
tgatataagggattaaaacttaaactgcacgnnnnnnnnnnattcattcacaaaattggaagatgatctatatcattaccatataatatgattgatatat |
532 |
Q |
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| T |
47621902 |
tgatataagggattaaaacttacactgcacg-tttttttttattcattcacaaaattggaagatgatctatatcattaccatataatatgattgatatat |
47622000 |
T |
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| Q |
533 |
gtcatc |
538 |
Q |
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| T |
47622001 |
gtcatc |
47622006 |
T |
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