View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5781_low_8 (Length: 531)
Name: NF5781_low_8
Description: NF5781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5781_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 9 - 511
Target Start/End: Complemental strand, 33206371 - 33205860
Alignment:
| Q |
9 |
gagatgaagagatatgtcacgattgcatgaaatttagtgtatgatgcggatacactaatatcgtaaatcttctatgtaaatttaatcaatggaacaaata |
108 |
Q |
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| T |
33206371 |
gagatgaagagatatgtcacgattgcatgaaatttagtgtatgatgcggatacaataatatcgtaaatcttctatgtaaatttaatcaatggaacaaata |
33206272 |
T |
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| Q |
109 |
tatgagagataaccttttttgaccatgttttctctcaacttttggatgaacaactttataagtcatgcacgcacgcatgtgctcacaaattattttgtaa |
208 |
Q |
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| T |
33206271 |
tatgagagataaccttttttgatcatgttttctctcaacttttggatgaacaactttataagtcacgcacgcacgcatgcgctcacaaattattttgtaa |
33206172 |
T |
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| Q |
209 |
cattgatactaacatattagtttatttacctcggaagaaataaaataaag-------attgtataacgcgtacctaattataatgtttttatatagaagg |
301 |
Q |
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| T |
33206171 |
cattgatactaacatattattttatttacctcggaagaaataaactaaagaccgtataacgtataacgtgtacctaattataatgtttttatatagaagg |
33206072 |
T |
|
| Q |
302 |
tgaaaaggatgat-agtggaaatacaaataacgtagaacacaagagtatttttgtgactttaccataattggtcacaattttttaccattgcgtaaaccc |
400 |
Q |
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| T |
33206071 |
tgaaaatggtggtgagtggaaatacaaataacctagaacacaagagtatttttttgactttaccataattggtcacaattttttaccattgcgtaaaccc |
33205972 |
T |
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| Q |
401 |
tcttatctgtaccatcatcctccaatttcgatcaacgtcaaaatcagtctcgaactatgattgaagcaataccataaaaacttaacattgacat-aaaaa |
499 |
Q |
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| T |
33205971 |
tcttatcggtaccatcatcctccaattccgatcaacctcaaaatcagtcttaaactatgattgaagcaataccataaaaacttaacattgacataaaaaa |
33205872 |
T |
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| Q |
500 |
ttatagtttctt |
511 |
Q |
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| T |
33205871 |
gtatagtttctt |
33205860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 259
Target Start/End: Complemental strand, 33206973 - 33206783
Alignment:
| Q |
76 |
tcttctatgtaaatttaatcaatggaacaaatatatgagagataacctt--ttttgaccatgttttctctcaacttttggatgaacaactttataagtca |
173 |
Q |
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|||||||||||||||||||| ||| || || ||||||||| |||||||| |||| |||||||||||| | ||||||||||| || ||||||||||| |
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| T |
33206973 |
tcttctatgtaaatttaatcgatgaaataa-tatatgagaaataaccttttttttcaccatgttttcttcccgtttttggatgaataattttataagtca |
33206875 |
T |
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| Q |
174 |
tgca------cgcacgcatgtgctcacaaattattttgtaacattgatactaacatattagtttatttacctcggaagaaataaaataaaga |
259 |
Q |
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| T |
33206874 |
cgcatatacgcgcacgcgcgcccacacaaattgttttgtgatattgatactaatgtattagttgatttgcctcggaagaaagacaataaaga |
33206783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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