View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5782-Insertion-1 (Length: 678)
Name: NF5782-Insertion-1
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782-Insertion-1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 7 - 494
Target Start/End: Original strand, 47477366 - 47477857
Alignment:
| Q |
7 |
acctttgatgcccataccaccgccacttctggatataccaaattttgtagccacctggatcttttctctgggcagttgctttaaagcctagtcaacaaaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47477366 |
acctttgatgcccataccaccgccacttctggatataccaaattttgtagccacctggatcttttctctgggcagttgctttaaagcctagtcaacaaaa |
47477465 |
T |
|
| Q |
107 |
tcaaataatgaaaagaaagnnnnnnnnnngctcaaattggcataa----caattgcggtattaaatttagaacataaaagaaattcttggcannnnnnnn |
202 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47477466 |
tcaaataatgaaaagaaagaaaaaaaaaagctcaaattggcataagtttcaattgcggtattaaatttagaacataaaagaaattcttggcatttttttt |
47477565 |
T |
|
| Q |
203 |
aatgataaatgttactaattagttagttgtgagattactatttactcgtctgtccggatttaaacccaggacctcttggcaaagtaccaattcttgtagt |
302 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47477566 |
aatgataaatgttactagttagttagttgtgagattactatttactcgtctgtccagatttaaacccaggacctcttggcaaagtaccaattcttgtagt |
47477665 |
T |
|
| Q |
303 |
tattattaatatgtatatacctttccaaccaaaatttcattcccaccatcgagtccataaacatcagcggtgtcnnnnnnngtgatgcctttactgaatg |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47477666 |
tattattaatatgtatatacctttccaaccaaaatttcattcccaccatcgagtccataaacatcagcggtgtcaaaaaaagtgatgcctttactgaatg |
47477765 |
T |
|
| Q |
403 |
catgattaattacggaaatgccaatttcttcaggaagaggatcattgtatcctccactgagggccatacaccctaaaccgaactttgaaacc |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47477766 |
catgattaattacggaaatgccaatttcttcaggaagaggatcattgtatcctccactgagggccatacaccctaaaccgaactttgaaacc |
47477857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 567 - 678
Target Start/End: Original strand, 47477933 - 47478044
Alignment:
| Q |
567 |
gacaattgtatatgtaagtgtaagtgtacaagtgagtgaagtgatgatacctgaaagccttgggttccaagtgagacatgaggaattagttcagtttgtg |
666 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47477933 |
gacatttgtatatgtaagtgtaagtgtacaagtgagtgaagtgatgatacctgaaagccttgggttccaagtgagacatgaggaattagttcagtttgtg |
47478032 |
T |
|
| Q |
667 |
tttgtgtttgtg |
678 |
Q |
| |
|
|||||||||||| |
|
|
| T |
47478033 |
tttgtgtttgtg |
47478044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 47474069 - 47474149
Alignment:
| Q |
32 |
cttctggatataccaaattttgtagccacctggatcttttctctgggcagttgctttaaagcctagtcaacaaaatcaaat |
112 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
47474069 |
cttctagatataccaaattttgtagccaactggatcttttctctgggcaattgctttaatgcctagtcaacaaaatcaaat |
47474149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 47486684 - 47486767
Alignment:
| Q |
32 |
cttctggatataccaaattttgtagccacctggatcttttctctgggcagttgctttaaagcctagtcaacaaaatcaaataat |
115 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47486684 |
cttctggctataccgaattttgtagccacctggaccttttctctaggtagttgctttaaagcctagtcaacaaaaccaaataat |
47486767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 320 - 475
Target Start/End: Original strand, 47486857 - 47487012
Alignment:
| Q |
320 |
tacctttccaaccaaaatttcattcccaccatcgagtccataaacatcagcggtgtcnnnnnnngtgatgcctttactgaatgcatgattaattacggaa |
419 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| ||||||||||||||| || || |||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
47486857 |
tacctttccaaccaatatttcattaccaccatcgactccataaacatcagcagtatcaaataaagtgatgcctttactaaatgcatacttaattatggaa |
47486956 |
T |
|
| Q |
420 |
atgccaatttcttcaggaagaggatcattgtatcctccactgagggccatacaccc |
475 |
Q |
| |
|
|| ||| || ||||||||| ||||| |||| |||||| ||| |||||||||| |
|
|
| T |
47486957 |
ataccatcttgctcaggaagaagatcactgtaggctccaccgagtcccatacaccc |
47487012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 389 - 494
Target Start/End: Original strand, 47474260 - 47474365
Alignment:
| Q |
389 |
gcctttactgaatgcatgattaattacggaaatgccaatttcttcaggaagaggatcattgtatcctccactgagggccatacaccctaaaccgaacttt |
488 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| ||| || ||||||||||||||||||||| ||||| |||| |||||||||| ||||| || ||| |
|
|
| T |
47474260 |
gcctttactgaaagcatagttaattacggaaataccatcttgttcaggaagaggatcattgtaagctccagtgagtcccatacacccgaaacccaatttt |
47474359 |
T |
|
| Q |
489 |
gaaacc |
494 |
Q |
| |
|
|||||| |
|
|
| T |
47474360 |
gaaacc |
47474365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 664
Target Start/End: Original strand, 47487029 - 47487078
Alignment:
| Q |
615 |
acctgaaagccttgggttccaagtgagacatgaggaattagttcagtttg |
664 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
47487029 |
acctgaaagccttgggttccaagtgtaacatgaggaattagctcggtttg |
47487078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 2097181 - 2097125
Alignment:
| Q |
221 |
ttagttagttgtgagattactatttactcgtctgtccggatttaaacccaggacctc |
277 |
Q |
| |
|
|||||||||||| |||||| ||||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
2097181 |
ttagttagttgttagattaatatttactcccttgtccgggtttgaacccaggacctc |
2097125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University