View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782-Insertion-3 (Length: 517)
Name: NF5782-Insertion-3
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 7 - 454
Target Start/End: Complemental strand, 41890402 - 41889955
Alignment:
| Q |
7 |
atttaagacttgttttatcaatgtattgattatcaatttgtgtcttttatttcaggctggaatttacataggtgtatgtattatgctggcatcaacagtt |
106 |
Q |
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| T |
41890402 |
atttaagacttgttttctcaatgtattgattatcaatttgtgtcttttatttcaggctggaatttacataggtgtatgtattatgctggcatcaacagtt |
41890303 |
T |
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| Q |
107 |
ggtggcttgaggaacattattgctgattcatccacttatagtttctatacctaaagtgaatgatgttgcaatcatcccaaactttaaccacttattgtat |
206 |
Q |
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| T |
41890302 |
ggtggcttgaggaacattattgctgattcatccacttatagtttctatacctaaagtgaatgatgttgcaattatcccaaactttaaccacttattgtat |
41890203 |
T |
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| Q |
207 |
gattaatttcaaaaaagtaatagctcacataaagtagcatatgttgaaggcatagagtaggagtaatatcttacaaatatcaaatatgttcaaagaagct |
306 |
Q |
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| T |
41890202 |
gattaatttcaaaaaagtaatagctcacataaagtagcacatgttgaaggcatagagtaggagtaatatcttacaaatatcaaatatgttcaaagaagct |
41890103 |
T |
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| Q |
307 |
gcaaatcatgtatgaatgttgattttcttgagttttcatatcaaaataaatagttgttaataagattatcttgctcatgcaatcctgaatgtccaattga |
406 |
Q |
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| T |
41890102 |
gcaaatcatgtatgaatgttggttttcttgagttttcatatcaaaataactagttgttaataagattatcttgctcatgtaatcctgaatgtccaattga |
41890003 |
T |
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| Q |
407 |
agttgatcctagaaagacaatgcattcttctgaaactgcaaggatacc |
454 |
Q |
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| T |
41890002 |
agttgatcctagaaagacaatgcattcttctgaaactgcaaggatacc |
41889955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 49 - 194
Target Start/End: Complemental strand, 41895917 - 41895772
Alignment:
| Q |
49 |
tcttttatttcaggctggaatttacataggtgtatgtattatgctggcatcaacagttggtggcttgaggaacattattgctgattcatccacttatagt |
148 |
Q |
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| T |
41895917 |
tctttcatttcaggttgcaatttgcataggtgtgtgtattatgttggcatctacaattggtggcttgaggaacattattgttgattcatccacttatagt |
41895818 |
T |
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| Q |
149 |
ttctatacctaaagtgaatgatgttgcaatcatcccaaactttaac |
194 |
Q |
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| T |
41895817 |
ttttatacctaaagtgcatgatgttacaattatcccaaactttaac |
41895772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 417
Target Start/End: Complemental strand, 41881725 - 41881632
Alignment:
| Q |
324 |
gttgattttcttgagttttcatatcaaaataaatagttgttaataagattatcttgctcatgcaatcctgaatgtccaattgaagttgatccta |
417 |
Q |
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| T |
41881725 |
gttggttttcttgagttttcatatcagaataactaattgttaatgagattatcttgctaatgtaatcttgaattttgggttgaagttgatccta |
41881632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 479 - 517
Target Start/End: Complemental strand, 41864158 - 41864120
Alignment:
| Q |
479 |
ttagaaattaaaatttgtatgtaataacatttttgtcct |
517 |
Q |
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| T |
41864158 |
ttagaaattaaaatttgtatgtaataacatttttgtcct |
41864120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 161
Target Start/End: Original strand, 22552211 - 22552317
Alignment:
| Q |
55 |
atttcaggctggaatttacataggtgtatgtattatgctggcatcaacagttggtggcttgaggaacattattgctgattcatccacttatagtttctat |
154 |
Q |
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| T |
22552211 |
atttcaggctgccatatacattggtgtgtgcattatgctggcatccactattggtggcttcaggaatatcattgctgattcatcatcatatagcttctac |
22552310 |
T |
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| Q |
155 |
acctaaa |
161 |
Q |
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| T |
22552311 |
acctaaa |
22552317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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