View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782-Insertion-4 (Length: 371)
Name: NF5782-Insertion-4
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782-Insertion-4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 8 - 371
Target Start/End: Original strand, 12581268 - 12581632
Alignment:
| Q |
8 |
ccatcatccattccaaaacgagacaaacaattcttgta-cggttttgtttcaaagaatcactgccactttgcgcggctagttttgtgattaaactgattg |
106 |
Q |
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| T |
12581268 |
ccatcatccattccaaaacgagacaaacaattcttgtaacggttttgtttcagagaatcactgccactttgcgcggctagttttgtgattaaactgattg |
12581367 |
T |
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| Q |
107 |
tattggaaacattggtacgaagcacgtcaatggtgtatgatgcgaggctaacgaggtcttttcctggaccaccgggctttgattcgagaatagttgagca |
206 |
Q |
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| T |
12581368 |
tattggacacattggtacgaagcacgtcaatggtgtatgatgcaaggctaacgaggtcttttcctgcaccaccgggctttgattcgagaatagttgaaca |
12581467 |
T |
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| Q |
207 |
aaaagaagggtttgtggctttcttacaaatctcttgcacattgacaacattagtggcataagaagatgcaacacatgcaagaaacacaaccattatagat |
306 |
Q |
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| T |
12581468 |
aaaagaagggtttgtggctttcttacaaatctcttgcacattgacaacattagtggcataagaagatgcaacacatgcaagaaacacaaccattatagat |
12581567 |
T |
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| Q |
307 |
aagaaacgaaccatattgtatttttaattctttcttgattctccaattgtaagattgtgatttcc |
371 |
Q |
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| T |
12581568 |
aagaaacgaaccatattgtatttttaattctttcttgattctccaattgtaagattgtgatttcc |
12581632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 63 - 329
Target Start/End: Complemental strand, 8503829 - 8503563
Alignment:
| Q |
63 |
atcactgccactttgcgcggctagttttgtgattaaactgattgtattggaaacattggtacgaagcacgtcaatggtgtatgatgcgaggctaacgagg |
162 |
Q |
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| T |
8503829 |
atcactgccactttgtgcgattagttttgtgattagagtgactgtattcgatacattggtatgaagcacgtcaatggtgtattgtgcaagactattgagg |
8503730 |
T |
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| Q |
163 |
tcttttcctggaccaccgggctttgattcgagaatagttgagcaaaaagaagggtttgtggctttcttacaaatctcttgcacattgacaacattagtgg |
262 |
Q |
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| T |
8503729 |
tcttgacctacaccacctggctttgatttgagaagagttaaacaaaaagaagggtctttggcttccttgcaaatagcttgcacatcaacaacattaacgg |
8503630 |
T |
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| Q |
263 |
cataagaagatgcaacacatgcaagaaacacaaccattatagataagaaacgaaccatattgtattt |
329 |
Q |
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| T |
8503629 |
cataggaggatgcaacacaaaaaagaaacacaacaactagggttaagaaatgagccatagtgtattt |
8503563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 8492599 - 8492539
Alignment:
| Q |
84 |
tagttttgtgattaaactgattgtattggaaacattggtacgaagcacgtcaatggtgtat |
144 |
Q |
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| T |
8492599 |
tagttttgtgattagagtgagtgtatttgacacattggtgtgaagcacgtcaagggtgtat |
8492539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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