View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782_high_15 (Length: 411)
Name: NF5782_high_15
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 393
Target Start/End: Complemental strand, 5016817 - 5016437
Alignment:
| Q |
13 |
aatatcatacggccaccgacatcatgaaagcatgactgggtggaagtgttgactaccgagtatccaatttaaacgtttttaatgatctggtgatcctaat |
112 |
Q |
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| T |
5016817 |
aatatcagacggccaccgacatcatgaaagcatgactgggtggaagtgttgactactgagtatccaatttaaacgtttttaatgatctggtgatcctgat |
5016718 |
T |
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| Q |
113 |
tggttgaaaatataattttgtttacgctaacaatgtatatgaactaaatcctcaataacaccatctaattacatcgaattatgtcatttttacaaactat |
212 |
Q |
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| T |
5016717 |
tgattgaaaatataattttgtttacgctaacaatgtatatgaactaaatcatcaataataccatctaattacatcgaattatgtcatttttacaaactat |
5016618 |
T |
|
| Q |
213 |
agtggatggcgacatgtcagtgtcagtgtcgtgtccgtgtctatccatgtttcatatatcaatcatatagtccaacaacatcttattactcatgaaggta |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5016617 |
agtggatggcgacatgtcagtgtcagtgtcgtgtccgtgtctatccatgtttcgtatatcaatcatatagtccaacaacatcttattactcatgaaggta |
5016518 |
T |
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| Q |
313 |
acctcttaatgaattatatattcctaaagaatacaatgcaatagcaatttacagattcaagtgtgatttaaaccccaattt |
393 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5016517 |
acctgttaatgaattatatattcctaaagaatacaatgcaatagtaatttacagattcaagtgtgatttaaaccccaattt |
5016437 |
T |
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