View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782_high_17 (Length: 402)
Name: NF5782_high_17
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 11 - 395
Target Start/End: Complemental strand, 25741296 - 25740912
Alignment:
| Q |
11 |
aatgaggatgttaatgttccattgggaatgattcttcctggtccatgtgttagtgattcatgtagcacttgtggtgtgtatccaaattctgattttcttt |
110 |
Q |
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| T |
25741296 |
aatgaggatgttaatgttccattgggaatgattcttcctggtccatgtgttagtgattcatgtagcacttgtggtgtgtatccaaattctgattttcttt |
25741197 |
T |
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| Q |
111 |
gtcaaggttttggaagcatttgttatcattgtcgaaccgagttaccattcgcggtgccgttgctaccaccatcaacatcaccacctaagaatcaatcttc |
210 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25741196 |
gtcaaggttttggaagcatttgttatgattgtcgaaccgagttaccattcgcggtgccgttgctaccaccatcaacatcaccacctaagaatcaatcttc |
25741097 |
T |
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| Q |
211 |
taaaggtgttgaagaaaaaactaacttgagaggttggaaattgatggtatttatgattattggatcagttggtgctttttctggtttatgcacttttctt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25741096 |
taaaggtgttgaagaaaaaactaacttgagaggttggaaattgatggtatttatgattattggatcagttggtgctttttctggtttatgcacttttctt |
25740997 |
T |
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| Q |
311 |
tattttcttatgattggtgcaagaaaattgttaaaggcgaaaatcgataattctgttcaacctacaagtagtgaatctgatgatg |
395 |
Q |
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| T |
25740996 |
tattttcttatgattggtgcaagaaaattgttaaaggcgaaaatcgataattctgttcaacctacaagtagtgaatctgatgatg |
25740912 |
T |
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