View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5782_high_24 (Length: 302)
Name: NF5782_high_24
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_high_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 12 - 287
Target Start/End: Original strand, 45402495 - 45402770
Alignment:
| Q |
12 |
ataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaagtgttgtagtccactttattagattattatatgcacgta |
111 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45402495 |
ataggtgaactagaaatttctcatattatagggtaaaatattggtggcagggagttaaaaagtgttgtagtccacattattagattattatatgcacgta |
45402594 |
T |
|
| Q |
112 |
gtctaatcgtaatacaccctactattttttatcataatgctacttacaaacattacctggtctctatccttgcaacaaaaatcatggatagagcctaacc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45402595 |
gtctaatcgtaatacaccctactattttttatcataatgctactcacaaacattacctggtctctatccttgcaacaaaaatcatggatagagcctaacc |
45402694 |
T |
|
| Q |
212 |
agatattttataaccttacagtataatctacaaaatttgaagatattgtaagtaatttcatgtttcaagttcctat |
287 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45402695 |
ggatattttataaccttgcagtataatctacaaaatttgaagatattgtaagtgatttcatgtttcaagttcctat |
45402770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 23362083 - 23362196
Alignment:
| Q |
12 |
ataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaagtgttgtagtccactttattagattattatatgcacgta |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23362083 |
ataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaagtgttgtagtccacattattagattattatatgcacgta |
23362182 |
T |
|
| Q |
112 |
gtctaatcgtaata |
125 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
23362183 |
gtctaatcgtaata |
23362196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 19611644 - 19611709
Alignment:
| Q |
12 |
ataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaagtgtt |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19611644 |
ataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaagtgtt |
19611709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 7600398 - 7600460
Alignment:
| Q |
12 |
ataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaagt |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7600398 |
ataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaagt |
7600460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 28462124 - 28462062
Alignment:
| Q |
12 |
ataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaagt |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28462124 |
ataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaagt |
28462062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 22557342 - 22557292
Alignment:
| Q |
232 |
gtataatctacaaaatttgaagatattgtaagtaatttcatgtttcaagtt |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||| ||||| |
|
|
| T |
22557342 |
gtataatctacaaaatttgaagatattgtatgtaattttatgtttgaagtt |
22557292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University