View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782_high_28 (Length: 287)
Name: NF5782_high_28
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 54172653 - 54172497
Alignment:
| Q |
1 |
acaaagacaatgataatgatgatgacaaattaggagatttcaataatcttaaaccaaccacaattggtaaacctccaaggcatgcttccagtttgagaca |
100 |
Q |
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| T |
54172653 |
acaaagacaatgataatgatgatgacaaattaggagatttcaataatcttaaaccaaccacaattggtaaacctccaaggcatgcttccagtttgagaca |
54172554 |
T |
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| Q |
101 |
tagccttagctccaatagattgaaactggctgcatcagatttggtatgttattcaac |
157 |
Q |
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| T |
54172553 |
tagccttagctccaatagattgaaactggctgcatcagatttggtatgttattcaac |
54172497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 197 - 277
Target Start/End: Complemental strand, 54172456 - 54172376
Alignment:
| Q |
197 |
atagtaattatatattttgacattttggttcatgtcatgttttgtgtcctagttgttcttactttttattattttcctttg |
277 |
Q |
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| T |
54172456 |
atagtaattatatattttgacattttggttcatgtcatgttttgtgtcctagttgttcttactttgtattaatttcttttg |
54172376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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