View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782_high_32 (Length: 276)
Name: NF5782_high_32
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 31212772 - 31212514
Alignment:
| Q |
1 |
tacaatgatacaaatattattcctggttctatattcatgaagtttggttaataattattacattttcatgagctttaataaaagtgaagtgtggatgtaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31212772 |
tacaatgatacaaatattattcctggttctatattcatgaagtttggttaataattattacattttcatgagctttaataaaagtgaagtgtggaggtaa |
31212673 |
T |
|
| Q |
101 |
ttctatgatttaagaaaagaaaattttccctacccatctcgtgtgaacgaaatacacaggagtgttaaattattttgtccatgcgaaatttttctggatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31212672 |
-------------gaaaagaaaattttccctacccatctcgtgtgaaggaaatacacaggagtgttaaattattttgtccatgcgaaatttttctggatg |
31212586 |
T |
|
| Q |
201 |
gatataaattatttgaatgttgtaataaacacaagaagactcatccccaaccatattttcccatgttaattg |
272 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31212585 |
gaaataaattatttgaatgttgtaataaacacaagaagactcatccccaaccatattttcccatgttaattg |
31212514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 31218527 - 31218269
Alignment:
| Q |
1 |
tacaatgatacaaatattattcctggttctatattcatgaagtttggttaataattattacattttcatgagctttaataaaagtgaagtgtggatgtaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31218527 |
tacaatgatacaaatattattcctggttctatattcatgaagtttggttaataattattacattttcatgagctttaataaaagtgaagtgtggaggtaa |
31218428 |
T |
|
| Q |
101 |
ttctatgatttaagaaaagaaaattttccctacccatctcgtgtgaacgaaatacacaggagtgttaaattattttgtccatgcgaaatttttctggatg |
200 |
Q |
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| T |
31218427 |
-------------gaaaagaaaattttccctacccatctcgtgtgaaggaaatacacaggagtgttaaattattttgtccatgcgaaatttttctggatg |
31218341 |
T |
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| Q |
201 |
gatataaattatttgaatgttgtaataaacacaagaagactcatccccaaccatattttcccatgttaattg |
272 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31218340 |
gaaataaattatttgaatgttgtaataaacacaagaagactcatccccaaccatattttcccatgttaattg |
31218269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 47896699 - 47896912
Alignment:
| Q |
1 |
tacaatgatacaaatattattcctggttctatattcatgaagtttggttaataattattacattttcatgagctttaataaaagtgaagtgtggatgtaa |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
47896699 |
tacaatgatacaaatattattcctggttctatattcatgaagtttggttaataattattacattttcatgagctttaattaaagtgaagtgtggaggtaa |
47896798 |
T |
|
| Q |
101 |
ttctatgatttaagaaaagaaaattttccctacccatctcgtgtgaacgaaatacacaggagtgttaaattattttgtccatgcgaaatttttctggatg |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47896799 |
gtctatgatttaagaatagaaaattttccctacccatctcgtgtgaaccaaatacacaggagtgttaaattattttgtccatgcgaaatttttctggatg |
47896898 |
T |
|
| Q |
201 |
gatataaattattt |
214 |
Q |
| |
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|| ||||||||||| |
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| T |
47896899 |
gaaataaattattt |
47896912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 4950653 - 4950599
Alignment:
| Q |
207 |
aattatttgaatgttgtaataaacacaagaagactca-tccccaaccatattttc |
260 |
Q |
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||||||||||| |||||||||||||||||||||||| |||| |||||||||||| |
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| T |
4950653 |
aattatttgaaccttgtaataaacacaagaagactcattccctaaccatattttc |
4950599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 4957624 - 4957570
Alignment:
| Q |
207 |
aattatttgaatgttgtaataaacacaagaagactca-tccccaaccatattttc |
260 |
Q |
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||||||||||| |||||||||||||||||||||||| |||| |||||||||||| |
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| T |
4957624 |
aattatttgaaccttgtaataaacacaagaagactcattccctaaccatattttc |
4957570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 4957697 - 4957623
Alignment:
| Q |
40 |
aagtttggttaataattattacattttcatgag-ctttaataaaagtgaagtgtggatgtaattctatgatttaa |
113 |
Q |
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||||||||||||||||||||||||| || | | |||| |||||||||| ||||||||||| ||||| ||||||| |
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| T |
4957697 |
aagtttggttaataattattacattcccacgggtcttttataaaagtgaggtgtggatgtagttctaggatttaa |
4957623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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