View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782_high_35 (Length: 239)
Name: NF5782_high_35
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 5883503 - 5883721
Alignment:
| Q |
20 |
attatgttctaaattttgaaggtctaactcagtttctgtaatttcgaaattttgaaaggtgatgaacataattacactaataatgcaagctttagaagta |
119 |
Q |
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| T |
5883503 |
attatgttctaaattttgaaggtctaactcagtttctgtaatttcgaaattttgaaaggtgatgaacataattacactaataatgcaagctttagaagta |
5883602 |
T |
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| Q |
120 |
caagtttattttattaaccatcaccatggaatggattttaccggcattgtaatcaggatcataatataatagtgcacccatcataatataatagtgcacc |
219 |
Q |
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| T |
5883603 |
caagtttattttattaaccatcaccatggaatggattttaccggcattctaatcaggatcataatataatagtgcacccatcataatataatagtgcacc |
5883702 |
T |
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| Q |
220 |
caacatattagtatatgaa |
238 |
Q |
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||||||||||||||||||| |
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| T |
5883703 |
caacatattagtatatgaa |
5883721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 5845430 - 5845543
Alignment:
| Q |
17 |
attattatgttctaaattttgaaggtctaactcagtttctgtaatttcgaaattttgaaaggtgatgaacata--attacactaataatgcaagctttag |
114 |
Q |
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|||||||||||||| |||||||||||||||||| ||| ||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
5845430 |
attattatgttctacattttgaaggtctaactctgttcttgtaatttccaaattttgaaaggtggtgaacataatattacactaataatgcaagctttag |
5845529 |
T |
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| Q |
115 |
aagtacaagtttat |
128 |
Q |
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||||| |||||||| |
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| T |
5845530 |
aagtagaagtttat |
5845543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 5891876 - 5891987
Alignment:
| Q |
17 |
attattatgttctaaattttgaaggtctaactcagtttctgtaatttcgaaattttgaaaggtgatgaacataattacactaataatgcaagctttagaa |
116 |
Q |
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|||||||||||||||||||||||||| |||||||||| | | ||||| ||||||||||||| | |||||||||||||| |||||||||||||||||||| |
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| T |
5891876 |
attattatgttctaaattttgaaggtttaactcagttcatatgatttccaaattttgaaagggggtgaacataattacaataataatgcaagctttagaa |
5891975 |
T |
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| Q |
117 |
gtacaagtttat |
128 |
Q |
| |
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||| |||||||| |
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| T |
5891976 |
gtagaagtttat |
5891987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 5897554 - 5897664
Alignment:
| Q |
18 |
ttattatgttctaaattttgaaggtctaactcagtttctgtaatttcgaaattttgaaaggtgatgaacataattacactaataatgcaagctttagaag |
117 |
Q |
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||||||||||||||||||||||||||| |||| ||| |||| ||||| ||||||||||||| | ||||||||| ||||||||||||||| |||||||||| |
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| T |
5897554 |
ttattatgttctaaattttgaaggtctgactccgttcctgtgatttccaaattttgaaaggcggtgaacataactacactaataatgcatgctttagaag |
5897653 |
T |
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| Q |
118 |
tacaagtttat |
128 |
Q |
| |
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|| |||||||| |
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| T |
5897654 |
tagaagtttat |
5897664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 5550448 - 5550358
Alignment:
| Q |
29 |
taaattttgaaggtctaactcagtttctgtaatttcgaaattttgaaaggtgatgaacataattacactaataatgcaagctttagaagta |
119 |
Q |
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||||||||||||||||||||||||| ||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||| ||||||| |
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| T |
5550448 |
taaattttgaaggtctaactcagttcgtgtgatttctaaattttgaaaggcggagaacataattacactaataatgcaagcttcagaagta |
5550358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 5855640 - 5855698
Alignment:
| Q |
17 |
attattatgttctaaattttgaaggtctaactcagtttctgtaatttcgaaattttgaa |
75 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||| ||||| |||||||||| |
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| T |
5855640 |
attattatgttctatgttttgaaggtctaactcagttcctgtgatttccaaattttgaa |
5855698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 5845614 - 5845654
Alignment:
| Q |
142 |
accatggaatggattttaccggcattgtaatcaggatcata |
182 |
Q |
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|||||||||||||||||||||||||| || ||||||||||| |
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| T |
5845614 |
accatggaatggattttaccggcattctattcaggatcata |
5845654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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