View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782_high_36 (Length: 238)
Name: NF5782_high_36
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 54172630 - 54172724
Alignment:
| Q |
11 |
catcatcattatcattgtctttgttgtaatcatcgccttctaatcttgtaattggaggagaataatccatatccacatgcataccaatctcctcc |
105 |
Q |
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| T |
54172630 |
catcatcattatcattgtctttgttgtaatcatcgccttctaatcttgtaattggaggagaataatccatatccacatgcataacaatcttctcc |
54172724 |
T |
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Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 54172789 - 54172838
Alignment:
| Q |
170 |
gtatgaatctgaagaataataagttgaaatcaaagaggtgaagttgtaaa |
219 |
Q |
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| T |
54172789 |
gtatgaatctgaagaataataagttgaaatcaaagaggtgaagttgtaaa |
54172838 |
T |
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