View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5782_high_40 (Length: 215)

Name: NF5782_high_40
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5782_high_40
NF5782_high_40
[»] chr1 (1 HSPs)
chr1 (11-183)||(11642259-11642433)
[»] chr8 (2 HSPs)
chr8 (13-68)||(28073571-28073626)
chr8 (13-79)||(6323289-6323355)
[»] chr4 (3 HSPs)
chr4 (13-68)||(11024860-11024915)
chr4 (13-79)||(36217341-36217407)
chr4 (16-74)||(40546194-40546252)
[»] scaffold0542 (1 HSPs)
scaffold0542 (11-68)||(10970-11027)
[»] chr3 (1 HSPs)
chr3 (11-68)||(41287759-41287816)
[»] chr5 (1 HSPs)
chr5 (37-81)||(41845272-41845316)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 11642259 - 11642433
Alignment:
Q  11 aatattaatcattttcttaatgactatgtaaaactcaaatgagacacataatgtg--agatggaggaagtaattaatttttgtttgaagtgcgcaaaatt 108  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  11642259 aatattaatcattttcttaataaccatgtaaaactcaaatgagacacataatgtgtgagatggaggaagtaattaatttttgtttgaagtgcgcaaaatt 11642358  T
Q  109 taaaatatgtaaaaagttcaatgctcaatgataaaactcttgctttgtaactttaatggaatattcactcttatt 183  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  11642359 taaaatatgtaaaaagttcaatgctcaatgataaaactctagctttgtaactttaatggaatgttcactcttatt 11642433  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 28073571 - 28073626
Alignment:
Q  13 tattaatcattttcttaatgactatgtaaaactcaaatgagacacataatgtgaga 68  Q
    ||||||| |||| |||||| || |||||||||||||||| ||||| ||||||||||    
T  28073571 tattaattatttccttaataaccatgtaaaactcaaatgtgacacctaatgtgaga 28073626  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 6323355 - 6323289
Alignment:
Q  13 tattaatcattttcttaatgactatgtaaaactcaaatgagacacataatgtgagatggaggaagta 79  Q
    ||||||||||||| ||||| | | ||||||||||||||| ||||| | |||||||| ||||| ||||    
T  6323355 tattaatcatttttttaataattgtgtaaaactcaaatgtgacacctgatgtgagacggagggagta 6323289  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 11024915 - 11024860
Alignment:
Q  13 tattaatcattttcttaatgactatgtaaaactcaaatgagacacataatgtgaga 68  Q
    |||||||||||||||||||  |  ||||||||||||||||||||| |||| |||||    
T  11024915 tattaatcattttcttaatttccgtgtaaaactcaaatgagacacctaatatgaga 11024860  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 36217407 - 36217341
Alignment:
Q  13 tattaatcattttcttaatgactatgtaaaactcaaatgagacacataatgtgagatggaggaagta 79  Q
    ||||||||||||| ||||| |  |||||||||||||||||||||  |||||||| |  |||||||||    
T  36217407 tattaatcatttttttaataatcatgtaaaactcaaatgagacatctaatgtgaaactgaggaagta 36217341  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 40546252 - 40546194
Alignment:
Q  16 taatcattttcttaatgactatgtaaaactcaaatgagacacataatgtgagatggagg 74  Q
    |||||||||  ||||| |||||||||||||||||  |||||| |||| |||||||||||    
T  40546252 taatcatttctttaataactatgtaaaactcaaaatagacacttaatttgagatggagg 40546194  T

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Target: scaffold0542 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 11027 - 10970
Alignment:
Q  11 aatattaatcattttcttaatgactatgtaaaactcaaatgagacacataatgtgaga 68  Q
    ||||||||| ||||| ||||| ||  |||||||||||||| ||||||||| |||||||    
T  11027 aatattaataatttttttaataacagtgtaaaactcaaataagacacatattgtgaga 10970  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 41287816 - 41287759
Alignment:
Q  11 aatattaatcattttcttaatgactatgtaaaactcaaatgagacacataatgtgaga 68  Q
    |||||||||||||| || |||  |||||||||||||||||| ||||| |||| |||||    
T  41287816 aatattaatcatttcctcaatacctatgtaaaactcaaatgtgacacctaatatgaga 41287759  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 41845272 - 41845316
Alignment:
Q  37 tgtaaaactcaaatgagacacataatgtgagatggaggaagtaat 81  Q
    ||||||||||||||||||||| |||||||||| || | |||||||    
T  41845272 tgtaaaactcaaatgagacacttaatgtgagacggggaaagtaat 41845316  T

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