View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782_high_6 (Length: 573)
Name: NF5782_high_6
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 13 - 524
Target Start/End: Original strand, 32617956 - 32618467
Alignment:
| Q |
13 |
ggagcagagacctttctagatgaaatgcgaagggagctaacgttacagcagcgatggcattccggtaaacgatgaaaacataatggctcatgcctttctt |
112 |
Q |
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| T |
32617956 |
ggagcagagacctttctagatgaaatgcgaagggagctaacgttacagcagcgatggcattccggtaaacgatgaaaacataatggctcatgcctttctt |
32618055 |
T |
|
| Q |
113 |
gatagcatccatggcaaaaatgaacataccagcagaaccaaattgaacagctaacaatagtagatatggctttgcatttttcaaccacgcacccattttt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32618056 |
gatagcatccatggcaaaaatgaacataccagcagaaccaaattgaacagccaacaatagtagatatggctttgcatttttcaaccacgcacccattttt |
32618155 |
T |
|
| Q |
213 |
gaatctctctattactctcctgggtgcttagcaatgtgaaattgctaatgtggctatgctgtgatattgtacattagtgcagaaggcattctgaatattt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32618156 |
gaatctctctattactctcctgggtgcttagcaatgtgaaattgctaatgtggctatgctgtgatattgtacattagtgcagaaggcattgtgaatattt |
32618255 |
T |
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| Q |
313 |
ataaccaaccattaaattaaatataacagtgcatttaaaataattgaaaaattgatcataatttcagcaagcaacaatttgcatgctgactcataatcca |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32618256 |
ataaccaaccattaaattaaatataacagtgcatttaaaataattgaaaaattgatcataatttcagcaagcaacaatttgcatgctgactcataatcca |
32618355 |
T |
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| Q |
413 |
aattaagaggagtaacaagttgtctagttctatatatgtctatgacttgaatttggcatctgtgaannnnnnnnacctttaactgtcattttagttttta |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
32618356 |
aattaagaggagtaacaagttgtctagttctatatatgtctatgacttgaatttggcatctgtgaattttttttacctttaactgtcagtttagttttta |
32618455 |
T |
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| Q |
513 |
gtggctgtggtg |
524 |
Q |
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|||||||||||| |
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| T |
32618456 |
gtggctgtggtg |
32618467 |
T |
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