View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782_low_10 (Length: 477)
Name: NF5782_low_10
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 90 - 200
Target Start/End: Complemental strand, 17127881 - 17127771
Alignment:
| Q |
90 |
gatcattccttcaagcctattactataaacccatttgatttctacaaatgaaacccaacaaaaacatcatgaatgactccaaaatccaaaatttctaatc |
189 |
Q |
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| T |
17127881 |
gatcattccttcaagcctgttgctataaacccatttgatttcaacaaatgaaacccaacaaaaacatcattaatgactccaaaatccaaaatttctaatc |
17127782 |
T |
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| Q |
190 |
aactaactaat |
200 |
Q |
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||||||||||| |
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| T |
17127781 |
aactaactaat |
17127771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 17128174 - 17128113
Alignment:
| Q |
1 |
cagctagatcacaacatgcttctacaaataaaatcaacattcttcaaacactacacagttca |
62 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17128174 |
cagctagatcacaacatgcttctacaaataaaatcaacattcttcaaacactacacagttca |
17128113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 446
Target Start/End: Complemental strand, 17127532 - 17127495
Alignment:
| Q |
409 |
ttcatttatgaattaaaaatccgaactttctattaaat |
446 |
Q |
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|||||| |||| |||||||||||||||||||||||||| |
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| T |
17127532 |
ttcattaatgagttaaaaatccgaactttctattaaat |
17127495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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