View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5782_low_11 (Length: 463)
Name: NF5782_low_11
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 133 - 451
Target Start/End: Original strand, 23975059 - 23975379
Alignment:
| Q |
133 |
catgaatcctaggaatataattacaaaatttgcaattattattgaaatttgaaatattttccataacaaatgttatatgtctttaaatataggtgactgg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23975059 |
catgaatcctaggaatataattacaaaatttgcaattatt--tgaaatttgaaatattttccataacaaatgttatatgtctttaaatataggtgactgg |
23975156 |
T |
|
| Q |
233 |
tatgatgctaatgttgttgacgttgagaatgaagcactcgccaccggtggtgctccaaattcatctgatgcctatacaatcaatggattgccgggtgatc |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
23975157 |
tatgatgctaatgttgttgacgttgagaatgaagctctcgtcaccggtggcgctccaaattcatctgatgcctacacaatcaatggattgcccggtgatc |
23975256 |
T |
|
| Q |
333 |
tctataattgttctgaaaatcgtaagtgatcactttgtaagaaacaatacatgagctagattttgagatgc----gttagtcccaaaaactccatccatg |
428 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| || |||||| |||||| |
|
|
| T |
23975257 |
tctataattgttccaaaaatcgtaagtgatcactttgtaagaaacaatacattagctagattttgagatgattgagttagtcacagaaactcgatccata |
23975356 |
T |
|
| Q |
429 |
cttcataggtttaaattgatatt |
451 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
23975357 |
cttcataggtttaaattgatatt |
23975379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 23974944 - 23974991
Alignment:
| Q |
18 |
tgttttacgctttaaaatacccatattgattcaaactaataaaataaa |
65 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
23974944 |
tgttttacgctttaaaataccgatattgattcctactaataaaataaa |
23974991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University