View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5782_low_13 (Length: 450)
Name: NF5782_low_13
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_low_13 |
 | |
|
| [»] scaffold0406 (2 HSPs) |
| | |
|
| [»] scaffold0006 (8 HSPs) |
| | |
|
| [»] scaffold0069 (2 HSPs) |
| | |
|
| [»] scaffold1480 (2 HSPs) |
| | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0406 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 155 - 393
Target Start/End: Original strand, 12040 - 12279
Alignment:
| Q |
155 |
tttggatagaattagaaaaatgtagaaaataaaatccaataataaaggtagacagtgcaaattgaatttcattataatcatgtgtaaccaataaaaaatt |
254 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12040 |
tttggttagaattagaaaaatgtagaaaataaaatccaataataaaggtagacagtgcaaattgaatttcattataatcatgtgaaaccaataaaaaatt |
12139 |
T |
|
| Q |
255 |
taagacttgtatttcttatcaaaagattaaatatactttttatctctataaaacgaccgaatttag-tttaagctcaattnnnnnnnttactttcatccc |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
12140 |
taagacttgtatttcttatcaaaagattaaatatactttttatctctataaatcgaccgaatttagttttaagctcaattaaaaaaattattttcatccc |
12239 |
T |
|
| Q |
354 |
ttaaagttttaaaagtattgtttctatcaaatgtagaatg |
393 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12240 |
ttcaagttttaaaagtattgtttctatcaaatgtagaatg |
12279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 11802 - 11927
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttcttctcgtcttccttgtgactttagtc |
100 |
Q |
| |
|
||||||| |||||||| | ||||||| ||||||| |||||| |||| ||||||||||||||||||||||||||||||| | ||||||||||||| |||| |
|
|
| T |
11802 |
gtccaattggcacaaccgtgtattctgttattttttcaacaatagaagttaaaatttccattgattttcttttcttctccttttccttgtgacttgagtc |
11901 |
T |
|
| Q |
101 |
aaaatctgaaagtgaaa-taaaagat |
125 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
11902 |
aaaatctgaaagtgaaagtaaaagat |
11927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 158; Significance: 7e-84; HSPs: 8)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 155 - 440
Target Start/End: Complemental strand, 100858 - 100569
Alignment:
| Q |
155 |
tttggatagaattagaaaaatgtagaaaataaaatccaataataaaggtagacagtgcaaattgaatttcattataatcatgtgtaaccaataaaaaatt |
254 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
100858 |
tttggttagaattagaaaaatgtagaaaataaaatccaattataaaggtagacagtgcaaattgaatttcattacaatcatgtgtaaccaatcaaaaatt |
100759 |
T |
|
| Q |
255 |
taagacttgtatttcttatcaaaagattaaatatactttttatctctataaaacgaccgaatttag-tttaagctcaatt--nnnnnnnttactttcatc |
351 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| ||||| ||||||| | | |||||| |
|
|
| T |
100758 |
taagacttgtatttcttatcaaaagataaaatatactttttatctctataaaaagactgaatttagttttaatctcaattaaaataaaataaaattcatc |
100659 |
T |
|
| Q |
352 |
ccttaaagttttaaaagtattgtttctatcaaatgtagaatgcgc-tnnnnnnnnttgggttcttgcatttgcatacttatgttcctttg |
440 |
Q |
| |
|
|||| || |||||||||||||||||||||| ||||||||||| || | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
100658 |
ccttcaatttttaaaagtattgtttctatcgaatgtagaatgtgcttaatataaattgggttcttgcatttgcatacttatgttcctttg |
100569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 164681 - 164556
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttcttctcgtcttccttgtgactttagtc |
100 |
Q |
| |
|
||||||||||||||| | ||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| ||||||||| |||| |
|
|
| T |
164681 |
gtccaataggcacaatggtatattctgttatttttccaacaacagaagttaaaatttccattgattttattttcttctcctcttctttgtgacttgagtc |
164582 |
T |
|
| Q |
101 |
aaaatctgaaagtgaaa-taaaagat |
125 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
164581 |
aaaatctgaaagtgaaagtaaaagat |
164556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 101102 - 100987
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttcttctcgtcttccttgtgactttagtc |
100 |
Q |
| |
|
|||||| |||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||| |||| |
|
|
| T |
101102 |
gtccaaaaggcacaacggtatattcggctatttttgcaacaacagaaattaaaatctccattgattttcgtttcttctcctcttctttgtgacttgagtc |
101003 |
T |
|
| Q |
101 |
aaaatctgaaagtgaa |
116 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
101002 |
aaaatctgaaagtgaa |
100987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 51330 - 51213
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattga-ttttcttttcttctcgtcttccttgtgactttagt |
99 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||| |||||| ||| |
|
|
| T |
51330 |
gtccaataggcacaacggtatattctgctatttttccaacaatcgaaattaaaatttccattgattttttttttcttctgctcttccttatgacttgagt |
51231 |
T |
|
| Q |
100 |
caaaatctgaaagtgaaa |
117 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
51230 |
caaaatctgaaagtgaaa |
51213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 155 - 322
Target Start/End: Complemental strand, 164446 - 164281
Alignment:
| Q |
155 |
tttggatagaattagaaaaatgtagaaaataaaatccaataataaaggtagacagtgcaaattgaatttcattataatcatgtgtaaccaataaaaaatt |
254 |
Q |
| |
|
||||| ||||||||||||||| |||| ||||||||||||||||| | ||||| |||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
164446 |
tttggttagaattagaaaaatatagacaataaaatccaataatattgatagactgtgcgaattgaatttcattacaatcatgtgtaaccaataaaaaatt |
164347 |
T |
|
| Q |
255 |
taagacttgtatttcttatcaaaagattaaatatactttttatctctataaaacgaccgaatttagtt |
322 |
Q |
| |
|
|||||| || |||| |||| ||| ||||||||| || ||||||||||||| ||| |||||||||| |
|
|
| T |
164346 |
taagac-tgaattttttataaaatttttaaatata-attctatctctataaaaagactgaatttagtt |
164281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 159 - 246
Target Start/End: Complemental strand, 51091 - 51004
Alignment:
| Q |
159 |
gatagaattagaaaaatgtagaaaataaaatccaataataaaggtagacagtgcaaattgaatttcattataatcatgtgtaaccaat |
246 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
51091 |
gatagaattagaaaaatgtagacaataaaatccaataataaaggtagactgtgcaaattgaatttcattacaatcgtgtgtaaccaat |
51004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 135724 - 135609
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttc---ttctcgtcttccttgtgacttta |
97 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| ||||||||||||||| | |
|
|
| T |
135724 |
gtccaataggcacaacagtatattctgctatttttccaacaatagaaattaaaatttccattgatttttttttcttattctgctcttccttgtgacttga |
135625 |
T |
|
| Q |
98 |
gtcaaaatctgaaagt |
113 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
135624 |
gtcaaagtctgaaagt |
135609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 251
Target Start/End: Complemental strand, 135471 - 135388
Alignment:
| Q |
170 |
aaaaatgtaga--aaataaaatccaataataaaggtagacagtgcaaattgaatttcattataatcatgtgtaaccaataaaaa |
251 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||| | ||||| || || ||||| |||| |
|
|
| T |
135471 |
aaaaatgtagacaaaataaaattcaataataaaggtagattttgcaaattgaatttcataacaatcacgtatatccaatcaaaa |
135388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 23)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 161 - 393
Target Start/End: Complemental strand, 13580535 - 13580300
Alignment:
| Q |
161 |
tagaattagaaaaatgtagaaaataaaatccaataataaaggtagacagtgcaaattgaatttcattataatcatgtgtaaccaat-aaaaaatttaaga |
259 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||| | ||||| |||| ||||||||||||||| | |||||||||||| || ||||||||||||| |
|
|
| T |
13580535 |
tagaatttgaaaaatgtagacaataaaatccaataatattgatagactgtgcgaattgaatttcattacagtcatgtgtaaccgataaaaaaatttaaga |
13580436 |
T |
|
| Q |
260 |
cttgtatttcttatcaaaagattaaatatact-ttttatctctataaaacgaccgaatttag-tttaagctcaattnnnnnnnttactttcatcccttaa |
357 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| |||||||||||||||| ||| ||||||| ||||| ||| || | | ||||||||||| | |
|
|
| T |
13580435 |
cttgtattttttataaaaagattaaatatactattttatctctataaaaataccaaatttagttttaatctccataaaaaaaatgattttcatcccttca |
13580336 |
T |
|
| Q |
358 |
agttttaaaagtattgtttctatcaaatgtagaatg |
393 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| |
|
|
| T |
13580335 |
agttttaaaagtattatttctatcccatgtagaatg |
13580300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 19142490 - 19142613
Alignment:
| Q |
3 |
ccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttcttctcgtcttccttgtgactttagtcaa |
102 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| || |
|
|
| T |
19142490 |
ccaataggcacaacggtatattctgctatttttgcaacaaaagaaattaaaatttccattgattttcgtttcttctcctcttccttgtgacttgagtaaa |
19142589 |
T |
|
| Q |
103 |
aatctgaaagtgaaa-taaaagat |
125 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
19142590 |
aatctgaaagtgaaagtaaaagat |
19142613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 13418586 - 13418469
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattga-ttttcttttcttctcgtcttccttgtgactttagt |
99 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||| |
|
|
| T |
13418586 |
gtccaataggcacaacggtatattctgctatttttccaacaatagaaattaaaatttccattgattttttttttcttctgctcttccttgtgacttgagt |
13418487 |
T |
|
| Q |
100 |
caaaatctgaaagtgaaa |
117 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
13418486 |
caaaatctgaaagtgaaa |
13418469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 13646543 - 13646418
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttcttctcgtcttccttgtgactttagtc |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||| |
|
|
| T |
13646543 |
gtccaataggcacaacagtatattctgctatttttgcaacaacagaaattaaaatttccattgatttttgtttcttctcctcttccttgtgacttgagtc |
13646444 |
T |
|
| Q |
101 |
aaaatctgaaagtgaaa-taaaagat |
125 |
Q |
| |
|
|||| |||||||||||| |||||||| |
|
|
| T |
13646443 |
aaaacctgaaagtgaaagtaaaagat |
13646418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 13667066 - 13666941
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttcttctcgtcttccttgtgactttagtc |
100 |
Q |
| |
|
||||||||||||||| | ||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| ||||||||| |||| |
|
|
| T |
13667066 |
gtccaataggcacaatggtatattctgttatttttccaacaacagaagttaaaatttccattgattttattttcttctcctcttctttgtgacttgagtc |
13666967 |
T |
|
| Q |
101 |
aaaatctgaaagtgaaa-taaaagat |
125 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
13666966 |
aaaatctgaaagtgaaagtaaaagat |
13666941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 13681151 - 13681034
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattga-ttttcttttcttctcgtcttccttgtgactttagt |
99 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||| |
|
|
| T |
13681151 |
gtccaataggcacaacggtatattctgctatttttccaacaatagaaattaaaatttccattgattttttttttcttctgctcttccttgtgacttgagt |
13681052 |
T |
|
| Q |
100 |
caaaatctgaaagtgaaa |
117 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
13681051 |
caaaatctgaaagtgaaa |
13681034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 15902836 - 15902961
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttcttctcgtcttccttgtgactttagtc |
100 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| |||| |
|
|
| T |
15902836 |
gtccgataggcacaactgtatattctgctatttttccaacaacagaaattaagatttccattgattttcttttcttctcttcttccttatgacttgagtc |
15902935 |
T |
|
| Q |
101 |
aaaatctgaaagtgaaa-taaaagat |
125 |
Q |
| |
|
||||||||||||| ||| |||||||| |
|
|
| T |
15902936 |
aaaatctgaaagtaaaagtaaaagat |
15902961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 13539721 - 13539605
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttcttctcgtcttccttgtgactttagtc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| ||| | |||| |
|
|
| T |
13539721 |
gtccaataggcacaacggtatattctgctatttttgcaacaacagaaattaaaatttccattgattttcgtttcttctcctcttctttgggacctgagtc |
13539622 |
T |
|
| Q |
101 |
aaaatctgaaagtgaaa |
117 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
13539621 |
aaaatctgaaagtgaaa |
13539605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 13580799 - 13580686
Alignment:
| Q |
4 |
caataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttcttctcgtcttccttgtgactttagtcaaa |
103 |
Q |
| |
|
|||||||| ||||| ||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
13580799 |
caataggctcaacggtatattctgttatttttccaacaatagaagttaaaatttccattgattttcttttcttctgttcttccttgtgacttgagtcaaa |
13580700 |
T |
|
| Q |
104 |
atctgaaagtgaaa |
117 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
13580699 |
atctgaaagtgaaa |
13580686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 20364957 - 20364832
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttcttctcgtcttccttgtgactttagtc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||| ||| | |||| |
|
|
| T |
20364957 |
gtccaataggcacaacggtatattctgctatttttgcaacaacagaaattaaaatatccattgattttcgtttcttctcctcttctttgggacctgagtc |
20364858 |
T |
|
| Q |
101 |
aaaatctgaaagtgaaa-taaaagat |
125 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
20364857 |
aaaatctgaaagtgaaagtaaaagat |
20364832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 20545954 - 20546079
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttcttctcgtcttccttgtgactttagtc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||| ||| | |||| |
|
|
| T |
20545954 |
gtccaataggcacaacggtatattctgctatttttgcaacaacagaaattaaaatatccattgattttcgtttcttctcctcttctttgggacctgagtc |
20546053 |
T |
|
| Q |
101 |
aaaatctgaaagtgaaa-taaaagat |
125 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
20546054 |
aaaatctgaaagtgaaagtaaaagat |
20546079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 20474032 - 20473908
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttcttctcgtcttccttgtgactttagtc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||| ||| | |||| |
|
|
| T |
20474032 |
gtccaataggcacaacggtatattctgctatttttgcaacaacagaaattaaaatatccattgattttcgtttcttctcctcttctttgggac-tgagtc |
20473934 |
T |
|
| Q |
101 |
aaaatctgaaagtgaaa-taaaagat |
125 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
20473933 |
aaaatctgaaagtgaaagtaaaagat |
20473908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 20557520 - 20557644
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttcttctcgtcttccttgtgactttagtc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||| ||| | |||| |
|
|
| T |
20557520 |
gtccaataggcacaacggtatattctgctatttttgcaacaacagaaattaaaatatccattgattttcgtttcttctcctcttctttgggac-tgagtc |
20557618 |
T |
|
| Q |
101 |
aaaatctgaaagtgaaa-taaaagat |
125 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
20557619 |
aaaatctgaaagtgaaagtaaaagat |
20557644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 155 - 322
Target Start/End: Complemental strand, 13666831 - 13666666
Alignment:
| Q |
155 |
tttggatagaattagaaaaatgtagaaaataaaatccaataataaaggtagacagtgcaaattgaatttcattataatcatgtgtaaccaataaaaaatt |
254 |
Q |
| |
|
||||| ||||||||||||||| |||| ||||||||||||||||| | ||||| |||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13666831 |
tttggttagaattagaaaaatatagacaataaaatccaataatattgatagactgtgcgaattgaatttcattacaatcatgtgtaaccaataaaaaatt |
13666732 |
T |
|
| Q |
255 |
taagacttgtatttcttatcaaaagattaaatatactttttatctctataaaacgaccgaatttagtt |
322 |
Q |
| |
|
|||||| || |||| |||| ||| ||||||||| || ||||||||||||| ||| |||||||||| |
|
|
| T |
13666731 |
taagac-tgaattttttataaaatttttaaatata-attctatctctataaaaagactgaatttagtt |
13666666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 13607064 - 13606949
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttc---ttctcgtcttccttgtgacttta |
97 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| ||||||||||||||| | |
|
|
| T |
13607064 |
gtccaataggcacaacagtatattctgctatttttccaacaatagaaattaaaatttccattgatttttttttcttattctgctcttccttgtgacttga |
13606965 |
T |
|
| Q |
98 |
gtcaaaatctgaaagt |
113 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
13606964 |
gtcaaagtctgaaagt |
13606949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 13502484 - 13502369
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgatttt-ctt-ttctt-ctcgtcttccttgtgacttta |
97 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| || ||||||||||||||| | |
|
|
| T |
13502484 |
gtccaataggcacaacggtatattctgctatttttccaacaatagaaattaaaatttccattgatttttcttcttcttactgctcttccttgtgacttga |
13502385 |
T |
|
| Q |
98 |
gtcaaaatctgaaagt |
113 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
13502384 |
gtcaaagtctgaaagt |
13502369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 214 - 307
Target Start/End: Original strand, 15903381 - 15903472
Alignment:
| Q |
214 |
aattgaatttcattataatcatgtgtaaccaataaaaaatttaagacttgtatttcttatcaaaagattaaatatactttttatctctataaaa |
307 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| ||||||| |
|
|
| T |
15903381 |
aattgaatttcattacaatcatgggtaaccaataaaaaatttaagacttgtattt-ttataaaaagattaaat-tactttttatctatataaaa |
15903472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 13418349 - 13418296
Alignment:
| Q |
193 |
ataataaaggtagacagtgcaaattgaatttcattataatcatgtgtaaccaat |
246 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13418349 |
ataataaaggtagactgtgcaaattgaatttcattacaatcatgtgtaaccaat |
13418296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 13680914 - 13680861
Alignment:
| Q |
193 |
ataataaaggtagacagtgcaaattgaatttcattataatcatgtgtaaccaat |
246 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13680914 |
ataataaaggtagactgtgcaaattgaatttcattacaatcatgtgtaaccaat |
13680861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 19142771 - 19142846
Alignment:
| Q |
185 |
aaaatccaataataaaggtagacagtgcaaattgaatttcattataatcatgtgtaaccaataaaaaatttaagac |
260 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| |||||||||| |||||| ||||||||| ||||||||||||| |
|
|
| T |
19142771 |
aaaatccaataataaaggtagattgggcaaattaaatttcattacaatcatacgtaaccaatcaaaaatttaagac |
19142846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 13646032 - 13645977
Alignment:
| Q |
198 |
aaaggtagacagtgcaaattgaatttcattataatcatgtgtaaccaataaaaaat |
253 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |||||||||||||| ||||||||| |
|
|
| T |
13646032 |
aaaggtagactttgcaaattgaattttattacaatcatgtgtaaccgataaaaaat |
13645977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 16472063 - 16472120
Alignment:
| Q |
19 |
tatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttctt |
76 |
Q |
| |
|
|||| ||||||| |||||||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
16472063 |
tataatctgctacttttccaacaacagaagataaaatttccattgtttctcttttctt |
16472120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 251
Target Start/End: Complemental strand, 13606811 - 13606728
Alignment:
| Q |
170 |
aaaaatgtaga--aaataaaatccaataataaaggtagacagtgcaaattgaatttcattataatcatgtgtaaccaataaaaa |
251 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||| | ||||| || || ||||| |||| |
|
|
| T |
13606811 |
aaaaatgtagacaaaataaaattcaataataaaggtagattttgcaaattgaatttcataacaatcacgtatatccaatcaaaa |
13606728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 22966 - 22841
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttcttctcgtcttccttgtgactttagtc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| |||| |
|
|
| T |
22966 |
gtccaataggcacaacggtatattctgctatttttgcaacaacagaaattaaaatttccattgattttcgtttcttctcctcttccttgagacttgagtc |
22867 |
T |
|
| Q |
101 |
aaaatctgaaagtgaaa-taaaagat |
125 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
22866 |
aaaatctgaaagtgaaagtaaaagat |
22841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 22722 - 22616
Alignment:
| Q |
155 |
tttggatagaattagaaaaatgtagaa-aataaaatccaataataaaggtagacagtgcaaattgaatttcattataatcatgtgtaaccaataaaaaat |
253 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||| | | ||| |||||||||||| |||||||||||||| || |||||| |
|
|
| T |
22722 |
tttggttagaattagaaaaatgtaattgaataaaatccaataataaaggtagattgggaaaactgaatttcattacaatcatgtgtaaccgatcaaaaat |
22623 |
T |
|
| Q |
254 |
ttaagac |
260 |
Q |
| |
|
||||||| |
|
|
| T |
22622 |
ttaagac |
22616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 21810769 - 21810653
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttcttctcgtcttccttgtgactttagtc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| |||| |
|
|
| T |
21810769 |
gtccaataggcacaacggtatattctgctatttttgcaacaacagaaattaaaatttccattgattttcgtttcttctcctcttccttgagacttgagtc |
21810670 |
T |
|
| Q |
101 |
aaaatctgaaagtgaaa |
117 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
21810669 |
aaaatctgaaagtgaaa |
21810653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 21810492 - 21810414
Alignment:
| Q |
182 |
aataaaatccaataataaaggtagacagtgcaaattgaatttcattataatcatgtgtaaccaataaaaaatttaagac |
260 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| |||||||||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
21810492 |
aataaaatccaataataaaggtagattgggcaaactgaatttcattacaatcatgtgtaaccgatcaaaaatttaagac |
21810414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 22294715 - 22294770
Alignment:
| Q |
71 |
tttcttctcgtcttccttgtgactttagtcaaaatctgaaagtgaaa-taaaagat |
125 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
22294715 |
tttcttctcctcttccttgtgacttgagtcaaaacctgaaagtgaaagtaaaagat |
22294770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 22295156 - 22295211
Alignment:
| Q |
198 |
aaaggtagacagtgcaaattgaatttcattataatcatgtgtaaccaataaaaaat |
253 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |||||||||||||| ||||||||| |
|
|
| T |
22295156 |
aaaggtagactatgcaaattgaattttattacaatcatgtgtaacctataaaaaat |
22295211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 38061336 - 38061448
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttcttctcgtcttccttgtgactttagtc |
100 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38061336 |
gtccaataggctcaacggtatattctgctatttttgcaacaacagaagttaaaatttccattgattttcttttcttctcgtcttccttgtgacttgagtc |
38061435 |
T |
|
| Q |
101 |
aaaatctgaaagt |
113 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38061436 |
aaaatctgaaagt |
38061448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 180 - 323
Target Start/End: Original strand, 38061596 - 38061738
Alignment:
| Q |
180 |
aaaataaaatccaataataaaggtagacagtgcaaattgaatttcattataatcatgtgtaaccaataaaaaatttaagacttgtatttcttatcaaaag |
279 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||| | ||| |||| |||||||| |||||| |||| | | ||| | || ||| | |
|
|
| T |
38061596 |
aaaataaaatccaaaaataaaggtagattgtgcaaattgaatttcataacaattatgtataaccaat-caaaattaaagaactttttttttaataaaagg |
38061694 |
T |
|
| Q |
280 |
attaaatatactttttatctctataaaacgaccgaatttagttt |
323 |
Q |
| |
|
|||||||||| ||||||||||||||||| || ||| |||||||| |
|
|
| T |
38061695 |
attaaatatattttttatctctataaaaagatcgattttagttt |
38061738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1480 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold1480
Description:
Target: scaffold1480; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 1576 - 1413
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttcttctcgtcttccttgtgactttagtc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||| |||| |
|
|
| T |
1576 |
gtccaataggcacaacggtatattctgctatttttgcaacaacagaaattaaaatttccattgattttcgtttcttcttctcttccttgagacttgagtc |
1477 |
T |
|
| Q |
101 |
aaaatctgaaagtgaaa-taaaag---------atggatgagggaaaaagaaacaagggtaaca |
154 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
1476 |
aaaatctgaaagtgaaagtaaaagatactgtttatggatgagggaaaaagaaacaagggcaaca |
1413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1480; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 1299 - 1221
Alignment:
| Q |
182 |
aataaaatccaataataaaggtagacagtgcaaattgaatttcattataatcatgtgtaaccaataaaaaatttaagac |
260 |
Q |
| |
|
||||||||||||||||||||||||| | | |||||||||||||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
1299 |
aataaaatccaataataaaggtagattgggtaaattgaatttcattacaatcatgtgtaaccgatcaaaaatttaagac |
1221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 44739 - 44855
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttcttctcgtcttccttgtgactttagtc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| ||| | |||| |
|
|
| T |
44739 |
gtccaataggcacaacggtatattctgctatttttgcaacaacagaaattaaaatttccattgattttcgtttcttctcctcttcattgagacatgagtc |
44838 |
T |
|
| Q |
101 |
aaaatctgaaagtgaaa |
117 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
44839 |
aaaatctgaaagtgaaa |
44855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 20818356 - 20818481
Alignment:
| Q |
1 |
gtccaataggcacaacgatatattctgctatttttccaacaacagaaattaaaatttccattgattttcttttcttctcgtcttccttgtgactttagtc |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| ||| | |||| |
|
|
| T |
20818356 |
gtccaataggcacaaaagtatattctgctattttagcaacaacagaaattaaaatttccattgattttcgtttcttctcctcttctttgggacctgagtc |
20818455 |
T |
|
| Q |
101 |
aaaatctgaaagtgaaa-taaaagat |
125 |
Q |
| |
|
||||| ||||||||||| |||||||| |
|
|
| T |
20818456 |
aaaatatgaaagtgaaagtaaaagat |
20818481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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