View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782_low_14 (Length: 437)
Name: NF5782_low_14
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 147 - 420
Target Start/End: Complemental strand, 4143783 - 4143511
Alignment:
| Q |
147 |
ataccaattcatttccacatactggcataaatttttatgtaaaagtattaaactaatgaacaatgcatattccaatcacacgtcaattttaagaactcta |
246 |
Q |
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| T |
4143783 |
ataccaattcatttccacatactggcataactttttatgtaaaagtattaaactaatgaacaatgcatattccaatcacacgtcaattttaagaactcta |
4143684 |
T |
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| Q |
247 |
gaaatgtgattcctcaatcctcaatgttgaaggtgtgcaacaaattacacacaaaaactacataccnnnnnnnnnnnntcctataagaaaagttgtgaaa |
346 |
Q |
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| T |
4143683 |
gaaatgtgattcctcagtcctcaatgttgaaggtgtgaaacaaattacacacaaaaactacataccaaaaataaaaaatcctataagaaaagttgtgaaa |
4143584 |
T |
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| Q |
347 |
gaactcaaactaaggtttggaagactatacacttcacaatggatgcttgtgggatccactacggtgccagaagt |
420 |
Q |
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| T |
4143583 |
gaactcaaactaaggtttggaagactatacacttcacaatggatgcttgt-ggatccactacggtgccagaagt |
4143511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 4143934 - 4143803
Alignment:
| Q |
48 |
gatcagtttatgattttatcgaactccctggtaattttttcattttccacattagttatttatctcattctgtataannnnnnngtttcataatgatata |
147 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||| ||| |
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| T |
4143934 |
gatcagtttatgattttatcgaactccccggtaattttt-cattttccacgttagttatttatctcattctgtataattattttctttcataatg--ata |
4143838 |
T |
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| Q |
148 |
taccaattcatttccacatactggcataaattttt |
182 |
Q |
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| T |
4143837 |
taccaattcgtttccacatactggcataacttttt |
4143803 |
T |
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