View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782_low_16 (Length: 407)
Name: NF5782_low_16
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 41 - 398
Target Start/End: Original strand, 24128651 - 24129010
Alignment:
| Q |
41 |
ctttatcatctgcggatggactcgtttgtaattaacatgattgtttttaaggtatatttgggggtataataataaaagtgttcatatactaaacacatga |
140 |
Q |
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| T |
24128651 |
ctttatcatctgcggatgaactcgtttgtaattaacatgattgtttttaaggtatatttgggggtataataataaaagtgttcatatactaaacacatga |
24128750 |
T |
|
| Q |
141 |
ttcaaaacttgttagaataaactcatctcacctgaagtagtgcaagaacgttacacactcgagttgattgtgctagagtaagagtcggtggtaaaagagt |
240 |
Q |
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| T |
24128751 |
ttcaaaacttgttagaataaactcatctcacctgaagtagtgcaagaacgttacacactcgagttgattgtgctagagtaagagtcggtggtaaaagagt |
24128850 |
T |
|
| Q |
241 |
acaatatattgaagttatttcctgaagg--nnnnnnnnnctacttagtgtgtgcagggcaaccaataaacactttttaaaacatatgaatgtttaaaaat |
338 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24128851 |
acaatatattgaagttatttcctgaaggaaaaaaaaaaactacttagtgtgtgcagggcaaccaataaacactttttaaaacatatgaatgtttaaaaat |
24128950 |
T |
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| Q |
339 |
taaaactatcaaagaacaaatagtattaataagttaatttaaaaacagttagagaataat |
398 |
Q |
| |
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| T |
24128951 |
taaaactatcaaagaacaaatagtattaataagttaatttaaaaacagttagagaataat |
24129010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 60 - 398
Target Start/End: Complemental strand, 45159576 - 45159239
Alignment:
| Q |
60 |
actcgtttgtaattaacatgattgtttttaaggtatatttgggggtataataataaaagtgttcatatactaaacacatgattcaaaacttgttagaata |
159 |
Q |
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| T |
45159576 |
actcatttctaattaacatgatagatttttaggtatatttgagggtataataa---aagtgttcatatactaaacacaagatttaaaacttgttagaaca |
45159480 |
T |
|
| Q |
160 |
aactcatctcacctgaagtagtgcaagaacgttacacactcgagttgattgtgctagagtaagagtcggtggtaaaagagtacaatatattgaagttatt |
259 |
Q |
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|||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
45159479 |
aacttatctcacctgaagtagtgcaagaacgttgcacgctcgagttgattgtcctagagtaagggtcggtggtgaaagagtacaatatattgaagttatt |
45159380 |
T |
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| Q |
260 |
tcctgaag--gnnnnnnnnnctacttagtgtgtgcagggcaaccaataaacactttttaaaacatatgaatgtttaaaaattaaaactatcaaagaacaa |
357 |
Q |
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|||| ||| |||||||||||| | |||||| ||||||||||| |||||||| ||||||| |||||||||||||||||||| |||||| |
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| T |
45159379 |
tcctaaagaaaaaaaaaaaactacttagtgtggtgaaggcaactaataaacacttcttaaaacacatgaatgcttaaaaattaaaactatcaaggaacaa |
45159280 |
T |
|
| Q |
358 |
atagtattaataagttaatttaaaaacagttagagaataat |
398 |
Q |
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| T |
45159279 |
atagtattaataagttaatttaaaaacatttagagtataat |
45159239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 266
Target Start/End: Original strand, 5120074 - 5120180
Alignment:
| Q |
160 |
aactcatctcacctgaagtagtgcaagaacgttacacactcgagttgattgtgctagagtaagagtcggtggtaaaagagtacaatatattgaagttatt |
259 |
Q |
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||||| |||||||||||||| ||||||||| | ||||||||||||||||||| | | ||| |||||||| |||||||| |||||||||| ||||| |
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| T |
5120074 |
aactcgtctcacctgaagtaatgcaagaacatggcacactcgagttgattgtgagggggagagattcggtggtgaaagagtaggatatattgaaattatt |
5120173 |
T |
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| Q |
260 |
tcctgaa |
266 |
Q |
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||||||| |
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| T |
5120174 |
tcctgaa |
5120180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 40817928 - 40817992
Alignment:
| Q |
159 |
aaactcatctcacctgaagtagtgcaagaacgttacacactcgagttgattgtgctagagtaaga |
223 |
Q |
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|||||||| ||||||||||||||| ||||| || ||||||||||||||||||||| |||||||| |
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| T |
40817928 |
aaactcattgcacctgaagtagtgccagaacattgcacactcgagttgattgtgcttgagtaaga |
40817992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 266
Target Start/End: Original strand, 40807052 - 40807156
Alignment:
| Q |
162 |
ctcatctcacctgaagtagtgcaagaacgttacacactcgagttgattgtgctagagtaagagtcggtggtaaaagagtacaatatattgaagttatttc |
261 |
Q |
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||||||||||| |||| ||||||||| | |||| |||||||||||||| | |||||||| || || | |||||||| |||||||||| ||||||| |
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| T |
40807052 |
ctcatctcaccatcagtaatgcaagaacatcgcacattcgagttgattgtgttggagtaagattctctgatgaaagagtaggatatattgaaattatttc |
40807151 |
T |
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| Q |
262 |
ctgaa |
266 |
Q |
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||||| |
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| T |
40807152 |
ctgaa |
40807156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 9517675 - 9517622
Alignment:
| Q |
159 |
aaactcatctcacctgaagtagtgcaagaacgttacacactcgagttgattgtg |
212 |
Q |
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||||| ||| ||||||||||||||| ||||| || ||||||||||||||||||| |
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| T |
9517675 |
aaacttatcgcacctgaagtagtgccagaacattgcacactcgagttgattgtg |
9517622 |
T |
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