View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782_low_18 (Length: 366)
Name: NF5782_low_18
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 34242090 - 34241742
Alignment:
| Q |
1 |
tcatcatgtgttttggtggaaatcgtgaaccaatacataaactcaactcagagattaggaaaaaggtaatttccattgtatagtttttcatttgttacga |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| |
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| T |
34242090 |
tcatgatgtgttttggtggaaatcgtgaaccaatacataaactcaactcagagattaggaaaaaggtagtttccatgatataatttttcatttgttacga |
34241991 |
T |
|
| Q |
101 |
tactcaatttttaggttgaattagttgtttaaagataaagtaaagttaaactaactcaacataaattataaattgttttcataaactatattttctcgag |
200 |
Q |
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||||| ||| |||||| ||||||||| ||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| |||||||| |
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| T |
34241990 |
gactcagtttctaggttaaattagttgcttaaagataaagtaaagttaaactacctcaacataagctataagttgttttcataaactatatattctcgag |
34241891 |
T |
|
| Q |
201 |
aacttatgaaagtaagttaaaaacaacttatggacgtgtataagatgtttgataaatccttcactgtaaagtacacgtatataagctcttcatttcctca |
300 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34241890 |
aacttatgaaagtaagttaaaaacaacttatagacatgtataagatgtttgataagtccttcactgtaaagtacacgcatataagctcttcatttcctca |
34241791 |
T |
|
| Q |
301 |
ttctcaagaaattattcaagcctactaccattatgtcgaaagtgatgaa |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34241790 |
ttctcaagaaattattcaagcctactaccattatgtcgaaaatgatgaa |
34241742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 1217843 - 1217806
Alignment:
| Q |
198 |
gagaacttatgaaagtaagttaaaaacaacttatggac |
235 |
Q |
| |
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||||||||||||||||||| | |||||||||||||||| |
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| T |
1217843 |
gagaacttatgaaagtaagatgaaaacaacttatggac |
1217806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 4401071 - 4401107
Alignment:
| Q |
198 |
gagaacttatgaaagtaagttaaaaacaacttatgga |
234 |
Q |
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|||||||||||||| ||||||||||||| |||||||| |
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|
| T |
4401071 |
gagaacttatgaaaataagttaaaaacagcttatgga |
4401107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 24281074 - 24281110
Alignment:
| Q |
198 |
gagaacttatgaaagtaagttaaaaacaacttatgga |
234 |
Q |
| |
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|||| |||||||||||||||| ||||||||||||||| |
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| T |
24281074 |
gagagcttatgaaagtaagttgaaaacaacttatgga |
24281110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 28660836 - 28660808
Alignment:
| Q |
161 |
ataaattataaattgttttcataaactat |
189 |
Q |
| |
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| T |
28660836 |
ataaattataaattgttttcataaactat |
28660808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 32071875 - 32071903
Alignment:
| Q |
161 |
ataaattataaattgttttcataaactat |
189 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
32071875 |
ataaattataaattgttttcataaactat |
32071903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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