View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782_low_19 (Length: 362)
Name: NF5782_low_19
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 108 - 344
Target Start/End: Complemental strand, 6685634 - 6685417
Alignment:
| Q |
108 |
ccgctcaaaattaacggcaaattttatctgccgcgaatgccaaaatttagtcttgaatgtgttttaaattaatttacacaaaaatacatttacgtgaggt |
207 |
Q |
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| T |
6685634 |
ccgctcaaaattaacgtcaaattttttctgccgcgaatgccaaaatttagtcgtgaatgtgttttaaattaatttacacagaaatacatttacgtgaggt |
6685535 |
T |
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| Q |
208 |
ttttccgtcgcaaatgcgtataatgctgcagtaaatttgtgtggaaattaaatccgcaacaaatggttgctactaaatcaatgaattcttgtagtgttga |
307 |
Q |
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| T |
6685534 |
ttttccgtcgcaaatgcatataatgctgc-------------------taaatccgcaacaaatggttgctactaaatcaatgaattcttgtagtgttga |
6685454 |
T |
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| Q |
308 |
caatgtcgttgtctaaggccttttgcctcttggtcct |
344 |
Q |
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| T |
6685453 |
caatgtcgttgtctaaggcattttgcctcttggtcct |
6685417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6685735 - 6685695
Alignment:
| Q |
1 |
attttaaaatttaaatttgatacctagattttgtggcggta |
41 |
Q |
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| T |
6685735 |
attttaaaatttaaatttgacacctagattttgtggcggta |
6685695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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