View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782_low_20 (Length: 360)
Name: NF5782_low_20
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 91 - 339
Target Start/End: Complemental strand, 8300886 - 8300638
Alignment:
| Q |
91 |
tgtgttggctgagctaattaaatttatggaaaaagagaaacaattcgagaagaagggagaaaatctggatagtcttgacgaaaaatggatgataattaag |
190 |
Q |
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| T |
8300886 |
tgtgttggctgagctaattaaatttatggaaaaagagaaacaattcgagaagaagggagaaaatctggatagtcttgacgaaaaatggatgataattaag |
8300787 |
T |
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| Q |
191 |
gtggttgtgttggataattctttgctgtttgttagatatatcaaaaactttacgctgaattttcttgagtctatcaagtctatgaaggatagagtggaat |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8300786 |
gtggttgtgttggataattctttgctgtttgttagatatatcaaaaactttacgctgaattttcttgagtctatcaagtctatggaggatagagtggaat |
8300687 |
T |
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| Q |
291 |
taaaagggaactcagaaagtatcagagttgaaatgcaaactatggagta |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8300686 |
taaaagggaactcagaaagtatcagagttgaaatgcaaactatggagta |
8300638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 91 - 337
Target Start/End: Complemental strand, 8297308 - 8297062
Alignment:
| Q |
91 |
tgtgttggctgagctaattaaatttatggaaaaagagaaacaattcgagaagaagggagaaaatctggatagtcttgacgaaaaatggatgataattaag |
190 |
Q |
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||||||||||||||||| || |||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||||||||||| |
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| T |
8297308 |
tgtgttggctgagctaaatacatttatggaaaaagcgaaacaattggagaagaagggagaaaatctggataatctggatgaaaaatggatgataattaag |
8297209 |
T |
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| Q |
191 |
gtggttgtgttggataattctttgctgtttgttagatatatcaaaaactttacgctgaattttcttgagtctatcaagtctatgaaggatagagtggaat |
290 |
Q |
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| T |
8297208 |
gtggctgtgatggataattctttggtgtttattagatatttcaaaaacttgatgctgaattttctcgagtctatcaagtctatggaggatagaatggaat |
8297109 |
T |
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| Q |
291 |
taaaagggaactcagaaagtatcagagttgaaatgcaaactatggag |
337 |
Q |
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| T |
8297108 |
taaaagggaacttagaaagtatcagagttgaaatgcaaactatggag |
8297062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 91 - 343
Target Start/End: Original strand, 18279339 - 18279591
Alignment:
| Q |
91 |
tgtgttggctgagctaattaaatttatggaaaaagagaaacaattcgagaagaagggagaaaatctggatagtcttgacgaaaaatggatgataattaag |
190 |
Q |
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||||||||||||||||| |||||||||||||||||| || ||||| |||||||||| ||||||||||||| |||||| | | ||||||||||||| || |
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| T |
18279339 |
tgtgttggctgagctaaataaatttatggaaaaagataatcaattggagaagaaggttgaaaatctggataatcttgatgtacaatggatgataatcaat |
18279438 |
T |
|
| Q |
191 |
gtggttgtgttggataattctttgctgtttgttagatatatcaaaaactttacgctgaattttcttgagtctatcaagtctatgaaggatagagtggaat |
290 |
Q |
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|||| ||| |||||| |||| || | || |||||||||||| |||||||||||||||||| |||||||| |||||| || |||||||| |||||| |
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| T |
18279439 |
gtggcaaagtttgataatattttgacgtatattggatatatcaaaagctttacgctgaattttctcgagtctattaagtctttggaggatagaatggaat |
18279538 |
T |
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| Q |
291 |
taaaagggaactcagaaagtatcagagttgaaatgcaaactatggagtataat |
343 |
Q |
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|||||||||||| ||||||| ||| |||||||| ||||||||||||| ||||| |
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| T |
18279539 |
taaaagggaacttagaaagtgtcaaagttgaaaagcaaactatggaggataat |
18279591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 173 - 342
Target Start/End: Complemental strand, 1145428 - 1145259
Alignment:
| Q |
173 |
aaatggatgataattaaggtggttgtgttggataattctttgctgtttgttagatatatcaaaaactttacgctgaattttcttgagtctatcaagtcta |
272 |
Q |
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|||||||||||||| || |||| | ||| |||||| |||| |||||||||| ||| |||| |||||| ||||||||||| ||||||||||||| | |
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| T |
1145428 |
aaatggatgataatcaatgtggctaagtttgataatattttgacgtttgttagaagtatgaaaagctttacactgaattttctcgagtctatcaagtatc |
1145329 |
T |
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| Q |
273 |
tgaaggatagagtggaattaaaagggaactcagaaagtatcagagttgaaatgcaaactatggagtataa |
342 |
Q |
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|| |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||| |
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| T |
1145328 |
tggaggatagaatggaattaaaagggaacttagaaagtatcagaattgaaatgcaaactatggaggataa |
1145259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 21120553 - 21120585
Alignment:
| Q |
305 |
gaaagtatcagagttgaaatgcaaactatggag |
337 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
21120553 |
gaaagtctcagagttgaaatgcaaactatggag |
21120585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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