View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782_low_21 (Length: 349)
Name: NF5782_low_21
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 30276638 - 30276977
Alignment:
| Q |
1 |
cgacaaaatctatagattcttcaagggttgagtttatggacaatatcttaggatatatgcgatctttaagatctttgactaacatttgatgggataagaa |
100 |
Q |
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| T |
30276638 |
cgacaaaatctatagattcttcaagggttgagtttatggacaatatcttaggatatatgcgatctttaagatctttgactaacatttgatgggataagaa |
30276737 |
T |
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| Q |
101 |
gtgactttctaggtgcacaagctcattttccactcctgtcacttcctctagtattctacacatgagaaaacaaagataagtacctcaacattatatgcca |
200 |
Q |
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| T |
30276738 |
gtgattctctaagtgcacaagctcattctccactcctgtcacttcctctagtattctacacatgagaaaacaaagataagtacctcaacattatatgcca |
30276837 |
T |
|
| Q |
201 |
ttcaacaataaaaagaataaagattagaaatctgattttgcaacctacgcaagagctaggtatgtaacatgcaggaatatccttcataaacatgaatgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30276838 |
ttcaacaataaaaagaataaagattagaaatctgattttgcaacctacgcaagagctaggtatgtaacatgcaggaatatccttcataaacatgaatgaa |
30276937 |
T |
|
| Q |
301 |
caatactagtccttcactttttataagcccctttgctact |
340 |
Q |
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||||||||||||||| ||||||||||||||||||| |||| |
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| T |
30276938 |
caatactagtccttctctttttataagcccctttgatact |
30276977 |
T |
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